Left reads: Input : 1516438 Mapped : 1238983 (81.7% of input) of these: 70034 ( 5.7%) have multiple alignments (7744 have >20) Right reads: Input : 1516438 Mapped : 1257474 (82.9% of input) of these: 71245 ( 5.7%) have multiple alignments (7744 have >20) 82.3% overall read mapping rate. Aligned pairs: 1125001 of these: 64294 ( 5.7%) have multiple alignments 20899 ( 1.9%) are discordant alignments 72.8% concordant pair alignment rate.