Left reads: Input : 325625 Mapped : 259427 (79.7% of input) of these: 16111 ( 6.2%) have multiple alignments (1101 have >20) Right reads: Input : 325625 Mapped : 262698 (80.7% of input) of these: 16281 ( 6.2%) have multiple alignments (1101 have >20) 80.2% overall read mapping rate. Aligned pairs: 221694 of these: 13965 ( 6.3%) have multiple alignments 6518 ( 2.9%) are discordant alignments 66.1% concordant pair alignment rate.