Left reads: Input : 338434 Mapped : 280787 (83.0% of input) of these: 10601 ( 3.8%) have multiple alignments (1373 have >20) Right reads: Input : 338434 Mapped : 267721 (79.1% of input) of these: 10205 ( 3.8%) have multiple alignments (1373 have >20) 81.0% overall read mapping rate. Aligned pairs: 236163 of these: 8985 ( 3.8%) have multiple alignments 5362 ( 2.3%) are discordant alignments 68.2% concordant pair alignment rate.