Left reads: Input : 1082016 Mapped : 949417 (87.7% of input) of these: 113268 (11.9%) have multiple alignments (20204 have >20) Right reads: Input : 1082016 Mapped : 949141 (87.7% of input) of these: 113908 (12.0%) have multiple alignments (20204 have >20) 87.7% overall read mapping rate. Aligned pairs: 855065 of these: 103244 (12.1%) have multiple alignments 18848 ( 2.2%) are discordant alignments 77.3% concordant pair alignment rate.