Left reads: Input : 1034020 Mapped : 925832 (89.5% of input) of these: 63383 ( 6.8%) have multiple alignments (5639 have >20) Right reads: Input : 1034020 Mapped : 902055 (87.2% of input) of these: 62486 ( 6.9%) have multiple alignments (5639 have >20) 88.4% overall read mapping rate. Aligned pairs: 829885 of these: 57749 ( 7.0%) have multiple alignments 15032 ( 1.8%) are discordant alignments 78.8% concordant pair alignment rate.