Left reads: Input : 658889 Mapped : 565778 (85.9% of input) of these: 17486 ( 3.1%) have multiple alignments (156 have >20) Right reads: Input : 658889 Mapped : 536058 (81.4% of input) of these: 16805 ( 3.1%) have multiple alignments (156 have >20) 83.6% overall read mapping rate. Aligned pairs: 478044 of these: 15049 ( 3.1%) have multiple alignments 8679 ( 1.8%) are discordant alignments 71.2% concordant pair alignment rate.