Left reads: Input : 601913 Mapped : 516710 (85.8% of input) of these: 21788 ( 4.2%) have multiple alignments (570 have >20) Right reads: Input : 601913 Mapped : 491257 (81.6% of input) of these: 21044 ( 4.3%) have multiple alignments (570 have >20) 83.7% overall read mapping rate. Aligned pairs: 436813 of these: 18849 ( 4.3%) have multiple alignments 7258 ( 1.7%) are discordant alignments 71.4% concordant pair alignment rate.