Left reads: Input : 1091630 Mapped : 979312 (89.7% of input) of these: 252686 (25.8%) have multiple alignments (67512 have >20) Right reads: Input : 1091630 Mapped : 958043 (87.8% of input) of these: 249396 (26.0%) have multiple alignments (67256 have >20) 88.7% overall read mapping rate. Aligned pairs: 890053 of these: 229915 (25.8%) have multiple alignments 15977 ( 1.8%) are discordant alignments 80.1% concordant pair alignment rate.