Left reads: Input : 589531 Mapped : 494103 (83.8% of input) of these: 146313 (29.6%) have multiple alignments (37489 have >20) Right reads: Input : 589531 Mapped : 513399 (87.1% of input) of these: 152168 (29.6%) have multiple alignments (37489 have >20) 85.4% overall read mapping rate. Aligned pairs: 439378 of these: 130511 (29.7%) have multiple alignments 11257 ( 2.6%) are discordant alignments 72.6% concordant pair alignment rate.