Left reads: Input : 1061838 Mapped : 945605 (89.1% of input) of these: 74544 ( 7.9%) have multiple alignments (5289 have >20) Right reads: Input : 1061838 Mapped : 918277 (86.5% of input) of these: 73014 ( 8.0%) have multiple alignments (5289 have >20) 87.8% overall read mapping rate. Aligned pairs: 841238 of these: 68094 ( 8.1%) have multiple alignments 14742 ( 1.8%) are discordant alignments 77.8% concordant pair alignment rate.