Left reads: Input : 1181404 Mapped : 1080103 (91.4% of input) of these: 83749 ( 7.8%) have multiple alignments (8275 have >20) Right reads: Input : 1181404 Mapped : 1032240 (87.4% of input) of these: 81308 ( 7.9%) have multiple alignments (8275 have >20) 89.4% overall read mapping rate. Aligned pairs: 963500 of these: 76174 ( 7.9%) have multiple alignments 16448 ( 1.7%) are discordant alignments 80.2% concordant pair alignment rate.