Left reads: Input : 1152791 Mapped : 984657 (85.4% of input) of these: 211285 (21.5%) have multiple alignments (42160 have >20) Right reads: Input : 1152791 Mapped : 962468 (83.5% of input) of these: 209473 (21.8%) have multiple alignments (42160 have >20) 84.5% overall read mapping rate. Aligned pairs: 869177 of these: 188948 (21.7%) have multiple alignments 24633 ( 2.8%) are discordant alignments 73.3% concordant pair alignment rate.