#!/bin/bash
#
#$ -cwd
#$ -j y
#$ -P waxmanlab
#$ -m be
#$ -M kkarri@bu.edu
#$ -o convert_fastq_gzip.log
#$ -N sra_fastq

echo "=========================================================="
echo "Starting on       : $(date)"
echo "Running on node   : $(hostname)"
echo "Current job ID    : $JOB_ID"
echo "Current job name  : $JOB_NAME"
echo "Task index number : $TASK_ID"
echo "=========================================================="

source ~/.bashrc
module load sratoolkit/2.8.0

echo "Converting sra to fastq"
sh /restricted/projectnb/waxmanlab/kkarri/liver_zonation/gzip.sh /restricted/projectnb/waxmanlab/kkarri/liver_zonation/fastqc_list

echo "Finished  .............. $(date)"