-----------------------
Start of variable list:
-----------------------
Sample_ID:
LZ_M20
Dataset_DIR:
/restricted/projectnb/waxmanlab/kkarri/liver_zonation/infusion
Sample_Labels_DIR:
/restricted/projectnb/waxmanlab/kkarri/liver_zonation/infusion/Scripts/00_Setup_Pipeline
-----------------------
End of variable list
-----------------------
==========================================================
Starting on : Sun May 13 12:08:35 EDT 2018
Running on node : scc-kb5
Current directory : /restricted/projectnb/waxmanlab/kkarri/liver_zonation/infusion_rerun/Scripts/03_Read_Length
Current job ID : 6184210
Current job name : Step_03_LZ_M20
Task index number : undefined
Parameter for multiple cores : 1
==========================================================

Change dir to scratch directory


Print scratch directory location:

/scratch/6184210.1.linga

Loading required modules...


List files in scratch directory:

total 580M
drwxr-xr-x   2 kkarri waxmanlab 4.0K May 13 12:08 .
drwxrwxrwt. 48 root   root      268K May 13 12:08 ..
-rw-r--r--   1 kkarri waxmanlab 580M May 13 12:08 LZ_M20.fastq.gz

Starting to run my commands


Unzip files:


Finished unzipping


Starting Read Length


Processing LZ_M20.fastq


Ending Read Length


List files in scratch

total 3.2G
drwxr-xr-x   2 kkarri waxmanlab 4.0K May 13 12:09 .
drwxrwxrwt. 48 root   root      268K May 13 12:08 ..
-rw-r--r--   1 kkarri waxmanlab 3.2G May 13 12:08 LZ_M20.fastq
==========================================================
Finished on : Sun May 13 12:09:36 EDT 2018
0 hours, 1 minutes and 1 seconds elapsed.
==========================================================