-----------------------
Start of variable list:
-----------------------
Sample_ID:
LZ_M21
Dataset_DIR:
/restricted/projectnb/waxmanlab/kkarri/liver_zonation/infusion
Sample_Labels_DIR:
/restricted/projectnb/waxmanlab/kkarri/liver_zonation/infusion/Scripts/00_Setup_Pipeline
-----------------------
End of variable list
-----------------------
==========================================================
Starting on : Fri May 11 10:54:09 EDT 2018
Running on node : scc-wf3
Current directory : /restricted/projectnb/waxmanlab/kkarri/liver_zonation/infusion/Scripts/03_Read_Length
Current job ID : 6177209
Current job name : Step_03_LZ_M21
Task index number : undefined
Parameter for multiple cores : 1
==========================================================

Change dir to scratch directory


Print scratch directory location:

/scratch/6177209.1.w

Loading required modules...


List files in scratch directory:

total 663M
drwx------   2 kkarri waxmanlab 4.0K May 11 10:54 .
drwxrwxrwt. 28 root   root       68K May 11 10:54 ..
-rw-r--r--   1 kkarri waxmanlab 663M May 11 10:54 LZ_M21.fastq.gz

Starting to run my commands


Unzip files:


Finished unzipping


Starting Read Length


Processing LZ_M21.fastq


Ending Read Length


List files in scratch

total 3.4G
drwx------   2 kkarri waxmanlab 4.0K May 11 10:54 .
drwxrwxrwt. 28 root   root       68K May 11 10:54 ..
-rw-r--r--   1 kkarri waxmanlab 3.4G May 11 10:54 LZ_M21.fastq
==========================================================
Finished on : Fri May 11 10:54:54 EDT 2018
0 hours, 0 minutes and 45 seconds elapsed.
==========================================================