----------------------- Start of variable list: ----------------------- Sample_ID: LZ_M28 Dataset_DIR: /restricted/projectnb/waxmanlab/kkarri/liver_zonation/infusion Sample_Labels_DIR: /restricted/projectnb/waxmanlab/kkarri/liver_zonation/infusion/Scripts/00_Setup_Pipeline BU_User: kkarri VM_DIR_FASTQC: /net/waxman-server/mnt/data/waxmanlabvm_home/waxmanlab/FASTQC/LZ OUTPUT_DIR: /restricted/projectnb/waxmanlab/kkarri/liver_zonation/infusion/Scripts/02_FASTQC/Job_Summary ----------------------- End of variable list ----------------------- ========================================================== Starting on : Fri May 11 10:46:22 EDT 2018 Running on node : scc-wn2 Current directory : /restricted/projectnb/waxmanlab/kkarri/liver_zonation/infusion/Scripts/02_FASTQC Current job ID : 6177156 Current job name : Step_02_LZ_M28 Task index number : undefined Parameter for multiple cores : 1 ========================================================== Change dir to scratch directory Print scratch directory location: /scratch/6177156.1.w Loading required modules... List files in scratch directory: total 686M drwxr-xr-x 3 kkarri waxmanlab 4.0K May 11 10:46 . drwxrwxrwt. 30 root root 4.0K May 11 10:46 .. -rw-r--r-- 1 kkarri waxmanlab 686M May 11 10:46 LZ_M28.fastq.gz drwxr-xr-x 2 kkarri waxmanlab 4.0K May 11 10:46 LZ_M28_FASTQC Starting to run my commands Unzip files: Finished unzipping Print first 20 lines of FASTQ file: @SRR6729571.1 SN390:1085:C9V75ACXX:7:1109:1402:1985 length=33 GTCATTTTAAGTATTACTGGAGCTAACCTGCGG +SRR6729571.1 SN390:1085:C9V75ACXX:7:1109:1402:1985 length=33 @@?DDDDFBF?:AFEHGGHIGDFAH