## htsjdk.samtools.metrics.StringHeader
# picard.analysis.CollectRnaSeqMetrics REF_FLAT=genes_refFlat RIBOSOMAL_INTERVALS=rRNA_intervalList_sorted STRAND_SPECIFICITY=SECOND_READ_TRANSCRIPTION_STRAND INPUT=LZ_M32_primary_unique.bam OUTPUT=CollectRnaSeqMetrics/LZ_M32_metrics    MINIMUM_LENGTH=500 RRNA_FRAGMENT_PERCENTAGE=0.8 METRIC_ACCUMULATION_LEVEL=[ALL_READS] ASSUME_SORTED=true STOP_AFTER=0 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## htsjdk.samtools.metrics.StringHeader
# Started on: Sun May 13 14:06:05 EDT 2018

## METRICS CLASS	picard.analysis.RnaSeqMetrics
PF_BASES	PF_ALIGNED_BASES	RIBOSOMAL_BASES	CODING_BASES	UTR_BASES	INTRONIC_BASES	INTERGENIC_BASES	IGNORED_READS	CORRECT_STRAND_READS	INCORRECT_STRAND_READS	PCT_RIBOSOMAL_BASES	PCT_CODING_BASES	PCT_UTR_BASES	PCT_INTRONIC_BASES	PCT_INTERGENIC_BASES	PCT_MRNA_BASES	PCT_USABLE_BASES	PCT_CORRECT_STRAND_READS	MEDIAN_CV_COVERAGE	MEDIAN_5PRIME_BIAS	MEDIAN_3PRIME_BIAS	MEDIAN_5PRIME_TO_3PRIME_BIAS	SAMPLE	LIBRARY	READ_GROUP
576619923	576586431	40218783	324379822	127079917	46152592	38771043	0	13188357	128953	0.069753	0.562587	0.2204	0.080045	0.067242	0.782987	0.782942	0.990317	0.766333	0.047975	0.531688	0.10875			

## HISTOGRAM	java.lang.Integer
normalized_position	All_Reads.normalized_coverage
0	0.044678
1	0.057089
2	0.089889
3	0.149464
4	0.203186
5	0.311947
6	0.399111
7	0.504258
8	0.579422
9	0.645469
10	0.711528
11	0.761396
12	0.80608
13	0.850543
14	0.890222
15	0.937239
16	0.957581
17	0.978681
18	1.007191
19	1.073095
20	1.052071
21	1.079705
22	1.102831
23	1.126406
24	1.146352
25	1.130738
26	1.138512
27	1.166534
28	1.207721
29	1.217575
30	1.258338
31	1.258102
32	1.243631
33	1.209554
34	1.216307
35	1.212272
36	1.203971
37	1.220493
38	1.212623
39	1.22852
40	1.247984
41	1.248471
42	1.268545
43	1.298314
44	1.286724
45	1.279102
46	1.303653
47	1.261659
48	1.249228
49	1.249817
50	1.22978
51	1.204143
52	1.193281
53	1.181209
54	1.223643
55	1.225473
56	1.264326
57	1.178749
58	1.191495
59	1.170699
60	1.182323
61	1.195168
62	1.160797
63	1.16721
64	1.168622
65	1.16052
66	1.158264
67	1.142523
68	1.117037
69	1.083731
70	1.086787
71	1.103131
72	1.110283
73	1.123293
74	1.125084
75	1.099561
76	1.115902
77	1.098443
78	1.063339
79	1.064759
80	1.056643
81	1.032298
82	1.030515
83	1.01973
84	1.011124
85	1.018209
86	1.01036
87	1.015675
88	0.974681
89	0.961157
90	0.926573
91	0.896942
92	0.875834
93	0.839377
94	0.777793
95	0.709212
96	0.703891
97	0.580807
98	0.460508
99	0.265064
100	0.094343