-----------------------
Start of variable list:
-----------------------
Dataset_DIR:
/restricted/projectnb/waxmanlab/kkarri/liver_zonation
Dataset_Label:
LZ
bin_mode:
On
SCRIPT_DIR:
/restricted/projectnb/waxmanlab/kkarri/liver_zonation/Scripts/09_bamCorrelate
OUTPUT_DIR:
/restricted/projectnb/waxmanlab/kkarri/liver_zonation/Scripts/09_bamCorrelate/Output
JOB_COUNTER:

zMin:
0.6
zMax:
1.0
BED_file_name:

-----------------------
End of variable list
-----------------------
==========================================================
Starting on : Wed May  9 20:27:39 EDT 2018
Running on node : scc-kb3
Current directory : /restricted/projectnb/waxmanlab/kkarri/liver_zonation/Scripts/09_bamCorrelate
Current job ID : 6139634
Current job name : bamCor_Full
Task index number : undefined
Parameter for multiple cores : 16
==========================================================

Change dir to scratch directory


Print scratch directory location:

/scratch/6139634.1.linga

Loading required modules...


Copy input sample BAM files to Input folder


Save Input file lists to a variable

Input_List:

Labels_List:


List files in scratch directory:

total 128K
drwx------   3 kkarri waxmanlab 4.0K May  9 20:27 .
drwxrwxrwt. 62 root   root      112K May  9 20:27 ..
drwxr-xr-x   2 kkarri waxmanlab 4.0K May  9 20:27 Input
-rwxr-xr-x   1 kkarri waxmanlab  318 May  9 20:27 Input_Samples.txt

Starting to run my commands


Starting bamCorrelate command


Ending bamCorrelate command


Starting plotCorrelation command


Ending plotCorrelation command


List files:

total 128K
drwx------   3 kkarri waxmanlab 4.0K May  9 20:27 .
drwxrwxrwt. 62 root   root      112K May  9 20:27 ..
drwxr-xr-x   2 kkarri waxmanlab 4.0K May  9 20:27 Input
-rwxr-xr-x   1 kkarri waxmanlab  318 May  9 20:27 Input_Samples.txt
==========================================================
Finished on : Wed May  9 20:27:57 EDT 2018
0 hours, 0 minutes and 18 seconds elapsed.
==========================================================