-----------------------
Start of variable list:
-----------------------
Sample_ID:
LZ_M3
Dataset_DIR:
/restricted/projectnb/waxmanlab/kkarri/liver_zonation
Sample_Labels_DIR:
/restricted/projectnb/waxmanlab/kkarri/liver_zonation/Scripts/00_Setup_Pipeline
-----------------------
End of variable list
-----------------------
==========================================================
Starting on : Wed May  9 16:50:42 EDT 2018
Running on node : scc-ka8
Current directory : /restricted/projectnb/waxmanlab/kkarri/liver_zonation/Scripts/03_Read_Length
Current job ID : 6135997
Current job name : Step_03_LZ_M3
Task index number : undefined
Parameter for multiple cores : 1
==========================================================

Change dir to scratch directory


Print scratch directory location:

/scratch/6135997.1.linga

Loading required modules...


List files in scratch directory:

total 630M
drwx------   2 kkarri waxmanlab 4.0K May  9 16:50 .
drwxrwxrwt. 50 root   root       72K May  9 16:50 ..
-rw-r--r--   1 kkarri waxmanlab 629M May  9 16:50 LZ_M3.fastq.gz

Starting to run my commands


Unzip files:


Finished unzipping


Starting Read Length


Processing LZ_M3.fastq


Ending Read Length


List files in scratch

total 3.4G
drwx------   2 kkarri waxmanlab 4.0K May  9 16:51 .
drwxrwxrwt. 48 root   root       72K May  9 16:51 ..
-rw-r--r--   1 kkarri waxmanlab 3.4G May  9 16:50 LZ_M3.fastq
==========================================================
Finished on : Wed May  9 16:51:59 EDT 2018
0 hours, 1 minutes and 17 seconds elapsed.
==========================================================