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Run time for each submitted job:
Job run times that deviate from the average should be inspected for possible errors (check the job log files)
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02_FASTQC
Step_02_LZ_M1.o6135827:0 hours, 1 minutes and 28 seconds elapsed.
Step_02_LZ_M10.o6135836:0 hours, 2 minutes and 59 seconds elapsed.
Step_02_LZ_M11.o6135837:0 hours, 2 minutes and 38 seconds elapsed.
Step_02_LZ_M12.o6135838:0 hours, 2 minutes and 27 seconds elapsed.
Step_02_LZ_M2.o6135828:0 hours, 1 minutes and 27 seconds elapsed.
Step_02_LZ_M3.o6135829:0 hours, 1 minutes and 22 seconds elapsed.
Step_02_LZ_M4.o6135830:0 hours, 1 minutes and 17 seconds elapsed.
Step_02_LZ_M5.o6135831:0 hours, 1 minutes and 16 seconds elapsed.
Step_02_LZ_M6.o6135832:0 hours, 2 minutes and 44 seconds elapsed.
Step_02_LZ_M7.o6135833:0 hours, 2 minutes and 52 seconds elapsed.
Step_02_LZ_M8.o6135834:0 hours, 2 minutes and 52 seconds elapsed.
Step_02_LZ_M9.o6135835:0 hours, 3 minutes and 17 seconds elapsed.
03_Read_Length
Step_03_LZ_M1.o6135995:0 hours, 0 minutes and 52 seconds elapsed.
Step_03_LZ_M10.o6136004:0 hours, 1 minutes and 30 seconds elapsed.
Step_03_LZ_M11.o6136005:0 hours, 1 minutes and 13 seconds elapsed.
Step_03_LZ_M12.o6136006:0 hours, 1 minutes and 2 seconds elapsed.
Step_03_LZ_M2.o6135996:0 hours, 0 minutes and 45 seconds elapsed.
Step_03_LZ_M3.o6135997:0 hours, 1 minutes and 17 seconds elapsed.
Step_03_LZ_M4.o6135998:0 hours, 1 minutes and 21 seconds elapsed.
Step_03_LZ_M5.o6135999:0 hours, 1 minutes and 20 seconds elapsed.
Step_03_LZ_M6.o6136000:0 hours, 1 minutes and 21 seconds elapsed.
Step_03_LZ_M7.o6136001:0 hours, 1 minutes and 40 seconds elapsed.
Step_03_LZ_M8.o6136002:0 hours, 1 minutes and 28 seconds elapsed.
Step_03_LZ_M9.o6136003:0 hours, 1 minutes and 44 seconds elapsed.
04_TopHat_Single_End
Step_04_LZ_M1.o6136163:1 hours, 34 minutes and 51 seconds elapsed.
Step_04_LZ_M10.o6136172:1 hours, 15 minutes and 8 seconds elapsed.
Step_04_LZ_M11.o6136173:1 hours, 13 minutes and 4 seconds elapsed.
Step_04_LZ_M12.o6136174:1 hours, 9 minutes and 8 seconds elapsed.
Step_04_LZ_M2.o6136164:0 hours, 40 minutes and 28 seconds elapsed.
Step_04_LZ_M3.o6136165:1 hours, 19 minutes and 37 seconds elapsed.
Step_04_LZ_M4.o6136166:1 hours, 5 minutes and 30 seconds elapsed.
Step_04_LZ_M5.o6136167:1 hours, 7 minutes and 2 seconds elapsed.
Step_04_LZ_M6.o6136168:1 hours, 4 minutes and 2 seconds elapsed.
Step_04_LZ_M7.o6136169:1 hours, 15 minutes and 36 seconds elapsed.
Step_04_LZ_M8.o6136170:1 hours, 18 minutes and 23 seconds elapsed.
Step_04_LZ_M9.o6136171:1 hours, 27 minutes and 48 seconds elapsed.
05_Read_Strandness
Step_05_LZ_M1.o6138045:0 hours, 0 minutes and 8 seconds elapsed.
Step_05_LZ_M10.o6138054:0 hours, 0 minutes and 7 seconds elapsed.
Step_05_LZ_M11.o6138055:0 hours, 0 minutes and 7 seconds elapsed.
Step_05_LZ_M12.o6138056:0 hours, 0 minutes and 7 seconds elapsed.
Step_05_LZ_M2.o6138046:0 hours, 0 minutes and 7 seconds elapsed.
Step_05_LZ_M3.o6138047:0 hours, 0 minutes and 9 seconds elapsed.
Step_05_LZ_M4.o6138048:0 hours, 0 minutes and 12 seconds elapsed.
Step_05_LZ_M5.o6138049:0 hours, 0 minutes and 12 seconds elapsed.
Step_05_LZ_M6.o6138050:0 hours, 0 minutes and 12 seconds elapsed.
Step_05_LZ_M7.o6138051:0 hours, 0 minutes and 12 seconds elapsed.
Step_05_LZ_M8.o6138052:0 hours, 0 minutes and 12 seconds elapsed.
Step_05_LZ_M9.o6138053:0 hours, 0 minutes and 12 seconds elapsed.
06_CollectRnaSeqMetrics
Step_06_LZ_M1.o6138139:0 hours, 2 minutes and 1 seconds elapsed.
Step_06_LZ_M10.o6138148:0 hours, 0 minutes and 51 seconds elapsed.
Step_06_LZ_M11.o6138149:0 hours, 0 minutes and 41 seconds elapsed.
Step_06_LZ_M12.o6138150:0 hours, 0 minutes and 39 seconds elapsed.
Step_06_LZ_M2.o6138140:0 hours, 0 minutes and 55 seconds elapsed.
Step_06_LZ_M3.o6138141:0 hours, 0 minutes and 41 seconds elapsed.
Step_06_LZ_M4.o6138142:0 hours, 0 minutes and 42 seconds elapsed.
Step_06_LZ_M5.o6138143:0 hours, 0 minutes and 43 seconds elapsed.
Step_06_LZ_M6.o6138144:0 hours, 0 minutes and 41 seconds elapsed.
Step_06_LZ_M7.o6138145:0 hours, 0 minutes and 51 seconds elapsed.
Step_06_LZ_M8.o6138146:0 hours, 0 minutes and 42 seconds elapsed.
Step_06_LZ_M9.o6138147:0 hours, 0 minutes and 51 seconds elapsed.
07a_Extract_Counts_HTSeq
Step_07a_LZ_M1.o6138153:0 hours, 11 minutes and 22 seconds elapsed.
Step_07a_LZ_M1.o6138154:0 hours, 11 minutes and 18 seconds elapsed.
Step_07a_LZ_M1.o6138155:0 hours, 11 minutes and 42 seconds elapsed.
Step_07a_LZ_M1.o6138156:0 hours, 12 minutes and 3 seconds elapsed.
Step_07a_LZ_M10.o6138189:0 hours, 26 minutes and 50 seconds elapsed.
Step_07a_LZ_M10.o6138190:0 hours, 29 minutes and 35 seconds elapsed.
Step_07a_LZ_M10.o6138191:0 hours, 31 minutes and 19 seconds elapsed.
Step_07a_LZ_M10.o6138192:0 hours, 30 minutes and 6 seconds elapsed.
Step_07a_LZ_M11.o6138193:0 hours, 20 minutes and 17 seconds elapsed.
Step_07a_LZ_M11.o6138194:0 hours, 24 minutes and 44 seconds elapsed.
Step_07a_LZ_M11.o6138195:0 hours, 25 minutes and 37 seconds elapsed.
Step_07a_LZ_M11.o6138196:0 hours, 25 minutes and 58 seconds elapsed.
Step_07a_LZ_M12.o6138197:0 hours, 8 minutes and 14 seconds elapsed.
Step_07a_LZ_M12.o6138198:0 hours, 22 minutes and 0 seconds elapsed.
Step_07a_LZ_M12.o6138199:0 hours, 24 minutes and 37 seconds elapsed.
Step_07a_LZ_M12.o6138200:0 hours, 24 minutes and 31 seconds elapsed.
Step_07a_LZ_M2.o6138157:0 hours, 28 minutes and 44 seconds elapsed.
Step_07a_LZ_M2.o6138158:0 hours, 33 minutes and 36 seconds elapsed.
Step_07a_LZ_M2.o6138159:0 hours, 34 minutes and 38 seconds elapsed.
Step_07a_LZ_M2.o6138160:0 hours, 34 minutes and 26 seconds elapsed.
Step_07a_LZ_M3.o6138161:0 hours, 23 minutes and 59 seconds elapsed.
Step_07a_LZ_M3.o6138162:0 hours, 26 minutes and 17 seconds elapsed.
Step_07a_LZ_M3.o6138163:0 hours, 28 minutes and 7 seconds elapsed.
Step_07a_LZ_M3.o6138164:0 hours, 28 minutes and 46 seconds elapsed.
Step_07a_LZ_M4.o6138165:0 hours, 24 minutes and 23 seconds elapsed.
Step_07a_LZ_M4.o6138166:0 hours, 25 minutes and 19 seconds elapsed.
Step_07a_LZ_M4.o6138167:0 hours, 28 minutes and 18 seconds elapsed.
Step_07a_LZ_M4.o6138168:0 hours, 26 minutes and 47 seconds elapsed.
Step_07a_LZ_M5.o6138169:0 hours, 22 minutes and 3 seconds elapsed.
Step_07a_LZ_M5.o6138170:0 hours, 24 minutes and 40 seconds elapsed.
Step_07a_LZ_M5.o6138171:0 hours, 27 minutes and 49 seconds elapsed.
Step_07a_LZ_M5.o6138172:0 hours, 25 minutes and 45 seconds elapsed.
Step_07a_LZ_M6.o6138173:0 hours, 24 minutes and 3 seconds elapsed.
Step_07a_LZ_M6.o6138174:0 hours, 24 minutes and 30 seconds elapsed.
Step_07a_LZ_M6.o6138175:0 hours, 28 minutes and 17 seconds elapsed.
Step_07a_LZ_M6.o6138176:0 hours, 27 minutes and 15 seconds elapsed.
Step_07a_LZ_M7.o6138177:0 hours, 26 minutes and 34 seconds elapsed.
Step_07a_LZ_M7.o6138178:0 hours, 29 minutes and 8 seconds elapsed.
Step_07a_LZ_M7.o6138179:0 hours, 12 minutes and 30 seconds elapsed.
Step_07a_LZ_M7.o6138180:0 hours, 31 minutes and 20 seconds elapsed.
Step_07a_LZ_M8.o6138181:0 hours, 22 minutes and 55 seconds elapsed.
Step_07a_LZ_M8.o6138182:0 hours, 25 minutes and 19 seconds elapsed.
Step_07a_LZ_M8.o6138183:0 hours, 25 minutes and 13 seconds elapsed.
Step_07a_LZ_M8.o6138184:0 hours, 25 minutes and 51 seconds elapsed.
Step_07a_LZ_M9.o6138185:0 hours, 28 minutes and 18 seconds elapsed.
Step_07a_LZ_M9.o6138186:0 hours, 28 minutes and 40 seconds elapsed.
Step_07a_LZ_M9.o6138187:0 hours, 12 minutes and 56 seconds elapsed.
Step_07a_LZ_M9.o6138188:0 hours, 30 minutes and 14 seconds elapsed.
07b_Extract_Counts_featureCounts
Step_07b_LZ_M1.o6138917:0 hours, 8 minutes and 51 seconds elapsed.
Step_07b_LZ_M1.o6138918:0 hours, 10 minutes and 4 seconds elapsed.
Step_07b_LZ_M1.o6138919:0 hours, 6 minutes and 36 seconds elapsed.
Step_07b_LZ_M1.o6138920:0 hours, 7 minutes and 2 seconds elapsed.
Step_07b_LZ_M1.o6138921:0 hours, 5 minutes and 53 seconds elapsed.
Step_07b_LZ_M1.o6138922:0 hours, 8 minutes and 17 seconds elapsed.
Step_07b_LZ_M1.o6138923:0 hours, 5 minutes and 41 seconds elapsed.
Step_07b_LZ_M1.o6138924:0 hours, 6 minutes and 44 seconds elapsed.
Step_07b_LZ_M10.o6138989:0 hours, 7 minutes and 10 seconds elapsed.
Step_07b_LZ_M10.o6138990:0 hours, 8 minutes and 19 seconds elapsed.
Step_07b_LZ_M10.o6138991:0 hours, 6 minutes and 15 seconds elapsed.
Step_07b_LZ_M10.o6138992:0 hours, 6 minutes and 36 seconds elapsed.
Step_07b_LZ_M10.o6138993:0 hours, 6 minutes and 28 seconds elapsed.
Step_07b_LZ_M10.o6138994:0 hours, 8 minutes and 5 seconds elapsed.
Step_07b_LZ_M10.o6138995:0 hours, 5 minutes and 45 seconds elapsed.
Step_07b_LZ_M10.o6138996:0 hours, 5 minutes and 25 seconds elapsed.
Step_07b_LZ_M11.o6138997:0 hours, 5 minutes and 47 seconds elapsed.
Step_07b_LZ_M11.o6138998:0 hours, 7 minutes and 9 seconds elapsed.
Step_07b_LZ_M11.o6138999:0 hours, 5 minutes and 15 seconds elapsed.
Step_07b_LZ_M11.o6139000:0 hours, 5 minutes and 31 seconds elapsed.
Step_07b_LZ_M11.o6139001:0 hours, 4 minutes and 15 seconds elapsed.
Step_07b_LZ_M11.o6139002:0 hours, 6 minutes and 29 seconds elapsed.
Step_07b_LZ_M11.o6139003:0 hours, 4 minutes and 32 seconds elapsed.
Step_07b_LZ_M11.o6139004:0 hours, 4 minutes and 41 seconds elapsed.
Step_07b_LZ_M12.o6139005:0 hours, 5 minutes and 22 seconds elapsed.
Step_07b_LZ_M12.o6139006:0 hours, 6 minutes and 14 seconds elapsed.
Step_07b_LZ_M12.o6139007:0 hours, 4 minutes and 22 seconds elapsed.
Step_07b_LZ_M12.o6139008:0 hours, 4 minutes and 58 seconds elapsed.
Step_07b_LZ_M12.o6139009:0 hours, 3 minutes and 44 seconds elapsed.
Step_07b_LZ_M12.o6139010:0 hours, 6 minutes and 2 seconds elapsed.
Step_07b_LZ_M12.o6139011:0 hours, 4 minutes and 49 seconds elapsed.
Step_07b_LZ_M12.o6139012:0 hours, 4 minutes and 7 seconds elapsed.
Step_07b_LZ_M2.o6138925:0 hours, 8 minutes and 52 seconds elapsed.
Step_07b_LZ_M2.o6138926:0 hours, 10 minutes and 38 seconds elapsed.
Step_07b_LZ_M2.o6138927:0 hours, 7 minutes and 21 seconds elapsed.
Step_07b_LZ_M2.o6138928:0 hours, 7 minutes and 53 seconds elapsed.
Step_07b_LZ_M2.o6138929:0 hours, 6 minutes and 1 seconds elapsed.
Step_07b_LZ_M2.o6138930:0 hours, 10 minutes and 54 seconds elapsed.
Step_07b_LZ_M2.o6138931:0 hours, 6 minutes and 20 seconds elapsed.
Step_07b_LZ_M2.o6138932:0 hours, 5 minutes and 40 seconds elapsed.
Step_07b_LZ_M3.o6138933:0 hours, 6 minutes and 29 seconds elapsed.
Step_07b_LZ_M3.o6138934:0 hours, 9 minutes and 16 seconds elapsed.
Step_07b_LZ_M3.o6138935:0 hours, 5 minutes and 51 seconds elapsed.
Step_07b_LZ_M3.o6138936:0 hours, 6 minutes and 9 seconds elapsed.
Step_07b_LZ_M3.o6138937:0 hours, 4 minutes and 50 seconds elapsed.
Step_07b_LZ_M3.o6138938:0 hours, 7 minutes and 28 seconds elapsed.
Step_07b_LZ_M3.o6138939:0 hours, 4 minutes and 50 seconds elapsed.
Step_07b_LZ_M3.o6138940:0 hours, 5 minutes and 49 seconds elapsed.
Step_07b_LZ_M4.o6138941:0 hours, 7 minutes and 15 seconds elapsed.
Step_07b_LZ_M4.o6138942:0 hours, 7 minutes and 48 seconds elapsed.
Step_07b_LZ_M4.o6138943:0 hours, 5 minutes and 46 seconds elapsed.
Step_07b_LZ_M4.o6138944:0 hours, 6 minutes and 11 seconds elapsed.
Step_07b_LZ_M4.o6138945:0 hours, 5 minutes and 8 seconds elapsed.
Step_07b_LZ_M4.o6138946:0 hours, 8 minutes and 4 seconds elapsed.
Step_07b_LZ_M4.o6138947:0 hours, 4 minutes and 51 seconds elapsed.
Step_07b_LZ_M4.o6138948:0 hours, 4 minutes and 53 seconds elapsed.
Step_07b_LZ_M5.o6138949:0 hours, 6 minutes and 1 seconds elapsed.
Step_07b_LZ_M5.o6138950:0 hours, 6 minutes and 58 seconds elapsed.
Step_07b_LZ_M5.o6138951:0 hours, 5 minutes and 8 seconds elapsed.
Step_07b_LZ_M5.o6138952:0 hours, 5 minutes and 39 seconds elapsed.
Step_07b_LZ_M5.o6138953:0 hours, 4 minutes and 45 seconds elapsed.
Step_07b_LZ_M5.o6138954:0 hours, 7 minutes and 41 seconds elapsed.
Step_07b_LZ_M5.o6138955:0 hours, 4 minutes and 44 seconds elapsed.
Step_07b_LZ_M5.o6138956:0 hours, 4 minutes and 32 seconds elapsed.
Step_07b_LZ_M6.o6138957:0 hours, 7 minutes and 3 seconds elapsed.
Step_07b_LZ_M6.o6138958:0 hours, 8 minutes and 14 seconds elapsed.
Step_07b_LZ_M6.o6138959:0 hours, 3 minutes and 0 seconds elapsed.
Step_07b_LZ_M6.o6138960:0 hours, 3 minutes and 11 seconds elapsed.
Step_07b_LZ_M6.o6138961:0 hours, 5 minutes and 4 seconds elapsed.
Step_07b_LZ_M6.o6138962:0 hours, 7 minutes and 29 seconds elapsed.
Step_07b_LZ_M6.o6138963:0 hours, 4 minutes and 52 seconds elapsed.
Step_07b_LZ_M6.o6138964:0 hours, 4 minutes and 34 seconds elapsed.
Step_07b_LZ_M7.o6138965:0 hours, 7 minutes and 6 seconds elapsed.
Step_07b_LZ_M7.o6138966:0 hours, 8 minutes and 12 seconds elapsed.
Step_07b_LZ_M7.o6138967:0 hours, 5 minutes and 54 seconds elapsed.
Step_07b_LZ_M7.o6138968:0 hours, 7 minutes and 24 seconds elapsed.
Step_07b_LZ_M7.o6138969:0 hours, 5 minutes and 36 seconds elapsed.
Step_07b_LZ_M7.o6138970:0 hours, 7 minutes and 40 seconds elapsed.
Step_07b_LZ_M7.o6138971:0 hours, 5 minutes and 28 seconds elapsed.
Step_07b_LZ_M7.o6138972:0 hours, 5 minutes and 1 seconds elapsed.
Step_07b_LZ_M8.o6138973:0 hours, 6 minutes and 31 seconds elapsed.
Step_07b_LZ_M8.o6138974:0 hours, 7 minutes and 10 seconds elapsed.
Step_07b_LZ_M8.o6138975:0 hours, 6 minutes and 7 seconds elapsed.
Step_07b_LZ_M8.o6138976:0 hours, 5 minutes and 28 seconds elapsed.
Step_07b_LZ_M8.o6138977:0 hours, 4 minutes and 46 seconds elapsed.
Step_07b_LZ_M8.o6138978:0 hours, 7 minutes and 45 seconds elapsed.
Step_07b_LZ_M8.o6138979:0 hours, 4 minutes and 48 seconds elapsed.
Step_07b_LZ_M8.o6138980:0 hours, 4 minutes and 27 seconds elapsed.
Step_07b_LZ_M9.o6138981:0 hours, 7 minutes and 44 seconds elapsed.
Step_07b_LZ_M9.o6138982:0 hours, 8 minutes and 19 seconds elapsed.
Step_07b_LZ_M9.o6138983:0 hours, 5 minutes and 58 seconds elapsed.
Step_07b_LZ_M9.o6138984:0 hours, 7 minutes and 32 seconds elapsed.
Step_07b_LZ_M9.o6138985:0 hours, 5 minutes and 53 seconds elapsed.
Step_07b_LZ_M9.o6138986:0 hours, 9 minutes and 20 seconds elapsed.
Step_07b_LZ_M9.o6138987:0 hours, 5 minutes and 40 seconds elapsed.
Step_07b_LZ_M9.o6138988:0 hours, 5 minutes and 47 seconds elapsed.
08a_DiffExp_1_HTSeq
Step_08a_DiffExp_1a.o6139522:3 minutes and 0 seconds elapsed.
Step_08a_DiffExp_1b.o6139523:2 minutes and 2 seconds elapsed.
Step_08a_DiffExp_1c.o6139524:2 minutes and 58 seconds elapsed.
08b_DiffExp_1_featureCounts
Step_08b_DiffExp_1a.o6139625:4 minutes and 1 seconds elapsed.
Step_08b_DiffExp_1b.o6139626:2 minutes and 37 seconds elapsed.
Step_08b_DiffExp_1c.o6139627:3 minutes and 11 seconds elapsed.
08c_DiffExp_1_lncRNA_featureCounts
Step_08c_DiffExp_1d.o6139630:2 minutes and 6 seconds elapsed.
Step_08c_DiffExp_1e.o6139631:2 minutes and 3 seconds elapsed.
Step_08c_DiffExp_1f.o6139632:2 minutes and 4 seconds elapsed.
Step_08c_DiffExp_1g.o6139633:1 minutes and 34 seconds elapsed.
09_bamCorrelate
Step_09_bamCor_01.o6139635:0 hours, 0 minutes and 28 seconds elapsed.
Step_09_bamCor_02.o6139636:0 hours, 0 minutes and 24 seconds elapsed.
Step_09_bamCor_03.o6139637:0 hours, 0 minutes and 39 seconds elapsed.
Step_09_bamCor_04.o6139638:0 hours, 0 minutes and 43 seconds elapsed.
bamCor_Full.o6139634:0 hours, 0 minutes and 18 seconds elapsed.
10_UCSC_BigWig
12a_Pearson_Correlation_HTSeq
12b_Pearson_Correlation_featureCounts
#--------------------------------------------------------------
03_Run_Pipeline.sh run time:
3 hours, 52 minutes and 45 seconds elapsed.
#--------------------------------------------------------------