Left reads: Input : 17168681 Mapped : 14648092 (85.3% of input) of these: 678853 ( 4.6%) have multiple alignments (9515 have >20) Right reads: Input : 17168681 Mapped : 12898120 (75.1% of input) of these: 593292 ( 4.6%) have multiple alignments (9512 have >20) 80.2% overall read mapping rate. Aligned pairs: 11985441 of these: 533825 ( 4.5%) have multiple alignments 70195 ( 0.6%) are discordant alignments 69.4% concordant pair alignment rate.