#!/bin/bash
#
#$ -cwd
#$ -j y
#$ -P waxmanlab
#$ -m be
#$ -M kkarri@bu.edu
#$ -N bowtie-build
#$ -pe omp 28
#$ -l mem_per_core=18G
#$ -l h_rt=24:00:00
echo "=========================================================="
echo "Starting on       : $(date)"
echo "Running on node   : $(hostname)"
echo "Current job ID    : $JOB_ID"
echo "Current job name  : $JOB_NAME"
echo "Task index number : $TASK_ID"
echo "=========================================================="

source ~/.bashrc

module load python/2.7.13
module load bowtie2
bowtie2-build /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/backup/Mus_musculus/UCSC/mm9/Sequence/Bowtie2Index/ERCC/bowtie2build/genome.fa /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/backup/Mus_musculus/UCSC/mm9/Sequence/Bowtie2Index/ERCC/bowtie2build/genome

echo "Finished  .............. $(date)"