Left reads: Input : 16537337 Mapped : 14220400 (86.0% of input) of these: 603375 ( 4.2%) have multiple alignments (6391 have >20) Right reads: Input : 16537337 Mapped : 12565230 (76.0% of input) of these: 527881 ( 4.2%) have multiple alignments (6390 have >20) 81.0% overall read mapping rate. Aligned pairs: 11933215 of these: 496061 ( 4.2%) have multiple alignments 55924 ( 0.5%) are discordant alignments 71.8% concordant pair alignment rate.