Left reads: Input : 16268058 Mapped : 9654015 (59.3% of input) of these: 1528557 (15.8%) have multiple alignments (28274 have >20) Right reads: Input : 16268058 Mapped : 9291165 (57.1% of input) of these: 1484122 (16.0%) have multiple alignments (28275 have >20) 58.2% overall read mapping rate. Aligned pairs: 9008480 of these: 1430234 (15.9%) have multiple alignments 64710 ( 0.7%) are discordant alignments 55.0% concordant pair alignment rate.