Left reads: Input : 17272729 Mapped : 9873815 (57.2% of input) of these: 1160701 (11.8%) have multiple alignments (16063 have >20) Right reads: Input : 17272729 Mapped : 9511839 (55.1% of input) of these: 1125263 (11.8%) have multiple alignments (16047 have >20) 56.1% overall read mapping rate. Aligned pairs: 9250876 of these: 1085805 (11.7%) have multiple alignments 48805 ( 0.5%) are discordant alignments 53.3% concordant pair alignment rate.