Left reads: Input : 20463935 Mapped : 12864701 (62.9% of input) of these: 1428990 (11.1%) have multiple alignments (21530 have >20) Right reads: Input : 20463935 Mapped : 12427327 (60.7% of input) of these: 1386051 (11.2%) have multiple alignments (21544 have >20) 61.8% overall read mapping rate. Aligned pairs: 12143969 of these: 1347968 (11.1%) have multiple alignments 43057 ( 0.4%) are discordant alignments 59.1% concordant pair alignment rate.