## htsjdk.samtools.metrics.StringHeader
# picard.analysis.CollectRnaSeqMetrics REF_FLAT=genes_refFlat RIBOSOMAL_INTERVALS=rRNA_intervalList_sorted STRAND_SPECIFICITY=SECOND_READ_TRANSCRIPTION_STRAND INPUT=G167_M12_primary_unique.bam OUTPUT=CollectRnaSeqMetrics/G167_M12_metrics    MINIMUM_LENGTH=500 RRNA_FRAGMENT_PERCENTAGE=0.8 METRIC_ACCUMULATION_LEVEL=[ALL_READS] ASSUME_SORTED=true STOP_AFTER=0 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## htsjdk.samtools.metrics.StringHeader
# Started on: Sun Jul 15 18:09:32 EDT 2018

## METRICS CLASS	picard.analysis.RnaSeqMetrics
PF_BASES	PF_ALIGNED_BASES	RIBOSOMAL_BASES	CODING_BASES	UTR_BASES	INTRONIC_BASES	INTERGENIC_BASES	IGNORED_READS	CORRECT_STRAND_READS	INCORRECT_STRAND_READS	PCT_RIBOSOMAL_BASES	PCT_CODING_BASES	PCT_UTR_BASES	PCT_INTRONIC_BASES	PCT_INTERGENIC_BASES	PCT_MRNA_BASES	PCT_USABLE_BASES	PCT_CORRECT_STRAND_READS	MEDIAN_CV_COVERAGE	MEDIAN_5PRIME_BIAS	MEDIAN_3PRIME_BIAS	MEDIAN_5PRIME_TO_3PRIME_BIAS	SAMPLE	LIBRARY	READ_GROUP
3394025037	3393827777	42916918	2278551861	789977227	41154491	241247128	0	19441908	22716	0.012646	0.671381	0.232769	0.012126	0.071084	0.90415	0.904097	0.998833	0.494348	0.236139	0.142899	1.684625			

## HISTOGRAM	java.lang.Integer
normalized_position	All_Reads.normalized_coverage
0	0.040227
1	0.083129
2	0.170093
3	0.274591
4	0.380142
5	0.484809
6	0.575817
7	0.652983
8	0.727272
9	0.790594
10	0.841611
11	0.887064
12	0.928675
13	0.967693
14	1.008437
15	1.044092
16	1.074179
17	1.101832
18	1.12608
19	1.147272
20	1.171519
21	1.191786
22	1.209724
23	1.228127
24	1.240261
25	1.252226
26	1.260721
27	1.27463
28	1.28892
29	1.305776
30	1.315345
31	1.325264
32	1.331422
33	1.337439
34	1.340582
35	1.344794
36	1.345736
37	1.344475
38	1.341196
39	1.336995
40	1.339339
41	1.343991
42	1.343793
43	1.339444
44	1.336086
45	1.332016
46	1.327528
47	1.326172
48	1.314578
49	1.303834
50	1.294566
51	1.283947
52	1.276349
53	1.2745
54	1.269752
55	1.262076
56	1.263025
57	1.261989
58	1.261892
59	1.258935
60	1.25276
61	1.240408
62	1.230474
63	1.220372
64	1.209686
65	1.196806
66	1.181954
67	1.171186
68	1.15724
69	1.14634
70	1.137463
71	1.128958
72	1.114804
73	1.091202
74	1.075583
75	1.052176
76	1.030163
77	1.007096
78	0.989524
79	0.968369
80	0.950775
81	0.930207
82	0.906189
83	0.881241
84	0.851107
85	0.817991
86	0.781773
87	0.735567
88	0.688718
89	0.642141
90	0.593705
91	0.538507
92	0.479058
93	0.417198
94	0.351442
95	0.282375
96	0.218034
97	0.154192
98	0.094996
99	0.050155
100	0.028719