## htsjdk.samtools.metrics.StringHeader
# picard.analysis.CollectRnaSeqMetrics REF_FLAT=genes_refFlat RIBOSOMAL_INTERVALS=rRNA_intervalList_sorted STRAND_SPECIFICITY=SECOND_READ_TRANSCRIPTION_STRAND INPUT=G167_M1_primary_unique.bam OUTPUT=CollectRnaSeqMetrics/G167_M1_metrics    MINIMUM_LENGTH=500 RRNA_FRAGMENT_PERCENTAGE=0.8 METRIC_ACCUMULATION_LEVEL=[ALL_READS] ASSUME_SORTED=true STOP_AFTER=0 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## htsjdk.samtools.metrics.StringHeader
# Started on: Sun Jul 15 18:08:41 EDT 2018

## METRICS CLASS	picard.analysis.RnaSeqMetrics
PF_BASES	PF_ALIGNED_BASES	RIBOSOMAL_BASES	CODING_BASES	UTR_BASES	INTRONIC_BASES	INTERGENIC_BASES	IGNORED_READS	CORRECT_STRAND_READS	INCORRECT_STRAND_READS	PCT_RIBOSOMAL_BASES	PCT_CODING_BASES	PCT_UTR_BASES	PCT_INTRONIC_BASES	PCT_INTERGENIC_BASES	PCT_MRNA_BASES	PCT_USABLE_BASES	PCT_CORRECT_STRAND_READS	MEDIAN_CV_COVERAGE	MEDIAN_5PRIME_BIAS	MEDIAN_3PRIME_BIAS	MEDIAN_5PRIME_TO_3PRIME_BIAS	SAMPLE	LIBRARY	READ_GROUP
3156723554	3156447562	156552572	2095332046	690862827	44476754	169305338	0	17476653	18256	0.049598	0.663826	0.218874	0.014091	0.053638	0.8827	0.882622	0.998956	0.491787	0.281561	0.159413	1.804774			

## HISTOGRAM	java.lang.Integer
normalized_position	All_Reads.normalized_coverage
0	0.074639
1	0.11605
2	0.19557
3	0.286852
4	0.355007
5	0.449506
6	0.537637
7	0.614558
8	0.69234
9	0.759791
10	0.816408
11	0.867505
12	0.915126
13	0.956034
14	0.994841
15	1.029285
16	1.059786
17	1.088135
18	1.111302
19	1.132849
20	1.156947
21	1.175035
22	1.195319
23	1.210231
24	1.221498
25	1.232298
26	1.23936
27	1.256154
28	1.266609
29	1.284745
30	1.293459
31	1.298159
32	1.303445
33	1.311732
34	1.316996
35	1.323732
36	1.322403
37	1.32324
38	1.313562
39	1.314389
40	1.315309
41	1.320791
42	1.324316
43	1.319733
44	1.315863
45	1.314727
46	1.313895
47	1.315619
48	1.311945
49	1.307064
50	1.299459
51	1.288501
52	1.286325
53	1.288325
54	1.285036
55	1.281345
56	1.279261
57	1.275323
58	1.279297
59	1.281358
60	1.279113
61	1.267968
62	1.259615
63	1.25304
64	1.240633
65	1.227803
66	1.210196
67	1.201839
68	1.191119
69	1.17984
70	1.169788
71	1.160514
72	1.149074
73	1.128873
74	1.11179
75	1.085332
76	1.061982
77	1.03956
78	1.019065
79	0.998391
80	0.98117
81	0.967012
82	0.943189
83	0.915114
84	0.882219
85	0.84357
86	0.800701
87	0.749351
88	0.69301
89	0.6388
90	0.584658
91	0.525488
92	0.464138
93	0.399483
94	0.332205
95	0.263665
96	0.200725
97	0.139347
98	0.08429
99	0.04409
100	0.026467