Martian Runtime - '3.1.0-v3.2.3'
2019-10-16 10:39:27 [build  ] Built with Go version go1.12.5
2019-10-16 10:39:27 [cmdline] mrp __Nash_2_run.mro Nash_2_run
2019-10-16 10:39:27 [pid    ] 135138
2019-10-16 10:39:27 [environ] HOSTNAME=scc-wj2.scc.bu.edu
2019-10-16 10:39:27 [environ] SGE_TASK_STEPSIZE=undefined
2019-10-16 10:39:27 [environ] SHELL=/bin/bash
2019-10-16 10:39:27 [environ] NHOSTS=1
2019-10-16 10:39:27 [environ] SGE_O_WORKDIR=/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH2
2019-10-16 10:39:27 [environ] TMPDIR=/scratch/49088.1.mem512
2019-10-16 10:39:27 [environ] SGE_O_HOME=/usr4/spclpgm/kkarri
2019-10-16 10:39:27 [environ] SGE_ARCH=linux-x64
2019-10-16 10:39:27 [environ] SGE_CELL=default
2019-10-16 10:39:27 [environ] LC_ALL=C
2019-10-16 10:39:27 [environ] PYTHONUSERBASE=/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/lib
2019-10-16 10:39:27 [environ] USER=kkarri
2019-10-16 10:39:27 [environ] LD_LIBRARY_PATH=
2019-10-16 10:39:27 [environ] SGE_TASK_LAST=undefined
2019-10-16 10:39:27 [environ] TENX_SUBCMD=count
2019-10-16 10:39:27 [environ] TENX_PRODUCT=cellranger
2019-10-16 10:39:27 [environ] SGE_TASK_ID=undefined
2019-10-16 10:39:27 [environ] SGE_BINARY_PATH=/usr/local/ogs-ge2011.11.p1/sge_root/bin/linux-x64
2019-10-16 10:39:27 [environ] PATH=/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-tiny-fastq/3.0.0:/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-tiny-ref/3.0.0:/share/pkg.7/cellranger/3.1.0/install/bin/miniconda-cr-cs/4.3.21-miniconda-cr-cs-c10/bin:/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/lib/bin:/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/tenkit/lib/bin:/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/tenkit/bin:/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/bin:/share/pkg.7/cellranger/3.1.0/install/bin/lz4/v1.8.1.2:/share/pkg.7/cellranger/3.1.0/install/bin/martian-cs/v3.2.3/bin:/share/pkg.7/cellranger/3.1.0/install/bin/STAR/5dda596:/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-tiny-fastq/3.0.0:/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-tiny-ref/3.0.0:/share/pkg.7/cellranger/3.1.0/install/bin/miniconda-cr-cs/4.3.21-miniconda-cr-cs-c10/bin:/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/lib/bin:/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/tenkit/lib/bin:/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/tenkit/bin:/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/bin:/share/pkg.7/cellranger/3.1.0/install/bin/lz4/v1.8.1.2:/share/pkg.7/cellranger/3.1.0/install/bin/martian-cs/v3.2.3/bin:/share/pkg.7/cellranger/3.1.0/install/bin/STAR/5dda596:/scratch/49088.1.mem512:/share/pkg.7/cellranger/3.1.0/install/bin:/share/pkg.7/bcl2fastq/2.20/install/bin:/usr/java/default/jre/bin:/usr/java/default/bin:/usr/lib64/qt-3.3/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin:/opt/dell/srvadmin/bin:/bin:/usr4/spclpgm/kkarri/bin:.
2019-10-16 10:39:27 [environ] SGE_STDERR_PATH=/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH2/Nash_2.o49088
2019-10-16 10:39:27 [environ] PWD=/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH2
2019-10-16 10:39:27 [environ] SGE_STDOUT_PATH=/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH2/Nash_2.o49088
2019-10-16 10:39:27 [environ] SGE_ACCOUNT=sge
2019-10-16 10:39:27 [environ] LANG=C
2019-10-16 10:39:27 [environ] JOB_SCRIPT=/var/spool/sge/scc-wj2/job_scripts/49088
2019-10-16 10:39:27 [environ] JOB_NAME=Nash_2
2019-10-16 10:39:27 [environ] SGE_ROOT=/usr/local/sge/sge_root
2019-10-16 10:39:27 [environ] SGE_JOB_SPOOL_DIR=/var/spool/sge/scc-wj2/active_jobs/49088.1
2019-10-16 10:39:27 [environ] ENVIRONMENT=BATCH
2019-10-16 10:39:27 [environ] SHLVL=3
2019-10-16 10:39:27 [environ] HOME=/usr4/spclpgm/kkarri
2019-10-16 10:39:27 [environ] TENX_COPYRIGHT=Copyright (c) 2019 10x Genomics, Inc.  All rights reserved.
2019-10-16 10:39:27 [environ] SGE_CWD_PATH=/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH2
2019-10-16 10:39:27 [environ] NQUEUES=1
2019-10-16 10:39:27 [environ] SGE_O_LOGNAME=kkarri
2019-10-16 10:39:27 [environ] SGE_O_MAIL=/var/spool/mail/kkarri
2019-10-16 10:39:27 [environ] PYTHONPATH=/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/tenkit/lib/python:/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/lib/python:/share/pkg.7/cellranger/3.1.0/install/bin/martian-cs/v3.2.3/adapters/python
2019-10-16 10:39:27 [environ] JOB_ID=49088
2019-10-16 10:39:27 [environ] LOGNAME=kkarri
2019-10-16 10:39:27 [environ] TENX_SCRIPTDIR=/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/bin
2019-10-16 10:39:27 [environ] TENX_BANNER=cellranger count (3.1.0)
Copyright (c) 2019 10x Genomics, Inc.  All rights reserved.
-------------------------------------------------------------------------------
2019-10-16 10:39:27 [environ] XDG_DATA_DIRS=/usr4/spclpgm/kkarri/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share:/usr/share
2019-10-16 10:39:27 [environ] SGE_TASK_FIRST=undefined
2019-10-16 10:39:27 [environ] TENX_VERSION=3.1.0
2019-10-16 10:39:27 [environ] SGE_O_PATH=/share/pkg.7/cellranger/3.1.0/install/bin:/share/pkg.7/bcl2fastq/2.20/install/bin:/usr/java/default/jre/bin:/usr/java/default/bin:/usr/lib64/qt-3.3/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin:/opt/dell/srvadmin/bin:/bin:/usr4/spclpgm/kkarri/bin:.
2019-10-16 10:39:27 [environ] SGE_O_HOST=scc4
2019-10-16 10:39:27 [environ] SGE_O_SHELL=/bin/bash
2019-10-16 10:39:27 [environ] NSLOTS=28
2019-10-16 10:39:27 [environ] SGE_STDIN_PATH=/dev/null
2019-10-16 10:39:27 [environ] BASH_FUNC_module()=() {  eval `/usr/local/Modules/$MODULE_VERSION/bin/modulecmd bash $*`
}
2019-10-16 10:39:27 [environ] _=/share/pkg.7/cellranger/3.1.0/install/bin/martian-cs/v3.2.3/bin/mrp
2019-10-16 10:39:27 [environ] MROFLAGS=--vdrmode=rolling
2019-10-16 10:39:27 [environ] MROPATH=/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/tenkit/mro:/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro
2019-10-16 10:39:27 [version] MRO Version=3.1.0
2019-10-16 10:39:27 [options] --jobmode=local
2019-10-16 10:39:27 [options] --maxjobs=0
2019-10-16 10:39:27 [options] --jobinterval=0
2019-10-16 10:39:27 [options] --vdrmode=rolling
2019-10-16 10:39:27 [options] --stackvars=false
2019-10-16 10:39:27 [options] --zip=false
2019-10-16 10:39:27 [options] --limit-loadavg=false
2019-10-16 10:39:27 [options] --noexit=false
2019-10-16 10:39:27 [options] --nopreflight=false
2019-10-16 10:39:27 [jobmngr] Job config = /share/pkg.7/cellranger/3.1.0/install/bin/martian-cs/v3.2.3/jobmanagers/config.json
2019-10-16 10:39:27 [jobmngr] Using 28 logical cores available on system.
2019-10-16 10:39:27 [jobmngr] Using 453 GB, 90% of system memory.
2019-10-16 10:39:28 [filesys] Pipestance path /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH2/Nash_2_run
2019-10-16 10:39:28 [filesys] Pipestance filesystem type nfs
2019-10-16 10:39:28 [filesys] 24 TB and 1,089,518,829 inodes available.
2019-10-16 10:39:28 [filesys] Pipestance filesystem nfs mount options: rw,nosuid,nodev,relatime,rw,vers=3,rsize=1048576,wsize=1048576,namlen=255,hard,proto=tcp,timeo=600,retrans=2,sec=sys,mountaddr=10.241.29.116,mountvers=3,mountport=20048,mountproto=tcp,local_lock=none,addr=10.241.29.116
2019-10-16 10:39:28 [filesys] Bin path /share/pkg.7/cellranger/3.1.0/install/bin/martian-cs/v3.2.3/bin
2019-10-16 10:39:28 [filesys] Bin filesystem type nfs
2019-10-16 10:39:28 [filesys] Bin filesystem nfs mount options: rw,nosuid,nodev,relatime,rw,vers=3,rsize=1048576,wsize=1048576,namlen=255,hard,proto=tcp,timeo=600,retrans=2,sec=sys,mountaddr=192.168.16.24,mountvers=3,mountport=890,mountproto=udp,local_lock=none,addr=192.168.16.24
Serving UI at http://scc-wj2:45431?auth=RVwoTiYmNOwMV3GHoQB_H1iuVCbKIwktl85WfgXDG68

Running preflight checks (please wait)...
2019-10-16 10:39:28 [runtime] (ready)           ID.Nash_2_run.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF
2019-10-16 10:39:29 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF.fork0.chnk0.main
2019-10-16 10:39:33 [runtime] (chunks_complete) ID.Nash_2_run.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF
2019-10-16 10:39:34 [runtime] (ready)           ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CELLRANGER_PREFLIGHT
2019-10-16 10:39:34 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CELLRANGER_PREFLIGHT.fork0.chnk0.main
2019-10-16 10:39:34 [runtime] (ready)           ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CELLRANGER_PREFLIGHT_LOCAL
2019-10-16 10:39:35 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CELLRANGER_PREFLIGHT_LOCAL.fork0.chnk0.main
2019-10-16 10:39:39 [runtime] (chunks_complete) ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CELLRANGER_PREFLIGHT
2019-10-16 10:39:40 [runtime] (chunks_complete) ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CELLRANGER_PREFLIGHT_LOCAL
2019-10-16 10:39:41 [runtime] (ready)           ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION
2019-10-16 10:39:42 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION.fork0.chnk0.main
2019-10-16 10:39:42 [runtime] (ready)           ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.DISABLE_FEATURE_STAGES
2019-10-16 10:39:43 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.DISABLE_FEATURE_STAGES.fork0.chnk0.main
2019-10-16 10:39:43 [runtime] (ready)           ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY
2019-10-16 10:39:43 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0.main
2019-10-16 10:39:44 [runtime] (chunks_complete) ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION
2019-10-16 10:39:45 [runtime] (chunks_complete) ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.DISABLE_FEATURE_STAGES
2019-10-16 10:39:49 [runtime] (progress)        ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0: Indexing genome...
2019-10-16 10:40:07 [runtime] (progress)        ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0: Building transcriptome...
2019-10-16 10:40:13 [runtime] (progress)        ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0: Building kmer index...
2019-10-16 10:41:02 [runtime] (progress)        ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0: Mapping reads...
2019-10-16 10:41:17 [runtime] (chunks_complete) ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY
2019-10-16 10:41:19 [runtime] (ready)           ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS
2019-10-16 10:41:19 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS.fork0.chnk0.main
2019-10-16 10:41:25 [runtime] (chunks_complete) ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS
2019-10-16 10:41:27 [runtime] (ready)           ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS
2019-10-16 10:41:27 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.split
2019-10-16 10:41:27 [runtime] (ready)           ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY
2019-10-16 10:41:27 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY.fork0.split
2019-10-16 10:41:29 [runtime] (split_complete)  ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS
2019-10-16 10:41:29 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.chnk0.main
2019-10-16 10:41:30 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.chnk1.main
2019-10-16 10:41:30 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.chnk2.main
2019-10-16 10:41:30 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.chnk3.main
2019-10-16 10:42:07 [runtime] (split_complete)  ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY
2019-10-16 10:42:40 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY.fork0.join
2019-10-16 10:45:10 [runtime] (join_complete)   ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY
2019-10-16 10:47:58 [runtime] (update)          ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0 chunks running (0/4 completed)
2019-10-16 10:54:12 [runtime] (update)          ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0 chunks running (0/4 completed)
2019-10-16 11:00:30 [runtime] (update)          ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0 chunks running (0/4 completed)
2019-10-16 11:06:42 [runtime] (update)          ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0 chunks running (1/4 completed)
2019-10-16 11:08:38 [runtime] (chunks_complete) ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS
2019-10-16 11:08:39 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.join
2019-10-16 11:08:40 [runtime] (join_complete)   ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS
2019-10-16 11:08:41 [runtime] (ready)           ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS
2019-10-16 11:08:42 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.split
2019-10-16 11:08:45 [runtime] (split_complete)  ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS
2019-10-16 11:08:48 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk00.main
2019-10-16 11:08:48 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk01.main
2019-10-16 11:08:49 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk02.main
2019-10-16 11:08:49 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk03.main
2019-10-16 11:08:50 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk04.main
2019-10-16 11:08:50 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk05.main
2019-10-16 11:08:51 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk06.main
2019-10-16 11:08:51 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk07.main
2019-10-16 11:08:52 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk08.main
2019-10-16 11:08:52 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk09.main
2019-10-16 11:08:53 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk10.main
2019-10-16 11:08:53 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk11.main
2019-10-16 11:08:54 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk12.main
2019-10-16 11:08:54 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk13.main
2019-10-16 11:08:57 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk14.main
2019-10-16 11:08:57 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk15.main
2019-10-16 11:08:58 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk16.main
2019-10-16 11:08:58 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk17.main
2019-10-16 11:08:59 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk18.main
2019-10-16 11:09:00 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk19.main
2019-10-16 11:09:00 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk20.main
2019-10-16 11:09:01 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk21.main
2019-10-16 11:09:01 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk22.main
2019-10-16 11:09:01 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk23.main
2019-10-16 11:09:02 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk24.main
2019-10-16 11:09:02 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk25.main
2019-10-16 11:09:03 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk26.main
2019-10-16 11:09:03 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk27.main
2019-10-16 11:09:03 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk28.main
2019-10-16 11:09:04 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk29.main
2019-10-16 11:09:05 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk30.main
2019-10-16 11:09:05 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk31.main
2019-10-16 11:09:05 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk32.main
2019-10-16 11:09:06 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk33.main
2019-10-16 11:09:06 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk34.main
2019-10-16 11:09:07 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk35.main
2019-10-16 11:09:07 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk36.main
2019-10-16 11:09:07 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk37.main
2019-10-16 11:09:08 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk38.main
2019-10-16 11:09:08 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk39.main
2019-10-16 11:15:00 [runtime] (update)          ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0 chunks running (2/40 completed)
2019-10-16 11:20:03 [runtime] (update)          ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0 chunks running (30/40 completed)
2019-10-16 11:23:39 [runtime] (chunks_complete) ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS
2019-10-16 11:23:40 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.join
2019-10-16 11:23:54 [runtime] (join_complete)   ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS
2019-10-16 11:24:03 [runtime] (ready)           ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS
2019-10-16 11:24:03 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.split
2019-10-16 11:24:06 [runtime] (split_complete)  ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS
2019-10-16 11:24:14 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk00.main
2019-10-16 11:24:15 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk01.main
2019-10-16 11:24:16 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk02.main
2019-10-16 11:24:16 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk03.main
2019-10-16 11:24:17 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk04.main
2019-10-16 11:24:17 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk05.main
2019-10-16 11:24:17 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk06.main
2019-10-16 11:24:18 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk07.main
2019-10-16 11:24:18 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk08.main
2019-10-16 11:24:20 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk09.main
2019-10-16 11:24:23 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk10.main
2019-10-16 11:24:25 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk11.main
2019-10-16 11:24:28 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk12.main
2019-10-16 11:24:32 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk13.main
2019-10-16 11:24:37 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk14.main
2019-10-16 11:24:41 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk15.main
2019-10-16 11:24:43 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk16.main
2019-10-16 11:24:46 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk17.main
2019-10-16 11:24:50 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk18.main
2019-10-16 11:24:52 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk19.main
2019-10-16 11:24:52 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk20.main
2019-10-16 11:24:53 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk21.main
2019-10-16 11:24:53 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk22.main
2019-10-16 11:24:54 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk23.main
2019-10-16 11:24:54 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk24.main
2019-10-16 11:24:55 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk25.main
2019-10-16 11:24:57 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk26.main
2019-10-16 11:25:00 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk27.main
2019-10-16 11:25:01 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk28.main
2019-10-16 11:25:02 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk29.main
2019-10-16 11:25:02 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk30.main
2019-10-16 11:25:04 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk31.main
2019-10-16 11:25:06 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk32.main
2019-10-16 11:25:10 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk33.main
2019-10-16 11:25:14 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk34.main
2019-10-16 11:25:17 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk35.main
2019-10-16 11:25:21 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk36.main
2019-10-16 11:26:37 [runtime] (chunks_complete) ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS
2019-10-16 11:26:38 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.join
2019-10-16 11:26:42 [runtime] (join_complete)   ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS
2019-10-16 11:26:43 [runtime] (ready)           ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS
2019-10-16 11:26:43 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.split
2019-10-16 11:26:46 [runtime] (split_complete)  ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS
2019-10-16 11:26:48 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk00.main
2019-10-16 11:26:49 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk01.main
2019-10-16 11:26:49 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk02.main
2019-10-16 11:26:50 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk03.main
2019-10-16 11:26:50 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk04.main
2019-10-16 11:26:51 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk05.main
2019-10-16 11:26:51 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk06.main
2019-10-16 11:26:52 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk07.main
2019-10-16 11:26:52 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk08.main
2019-10-16 11:26:53 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk09.main
2019-10-16 11:26:53 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk10.main
2019-10-16 11:26:53 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk11.main
2019-10-16 11:26:54 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk12.main
2019-10-16 11:26:54 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk13.main
2019-10-16 11:26:54 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk14.main
2019-10-16 11:26:54 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk15.main
2019-10-16 11:26:55 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk16.main
2019-10-16 11:26:55 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk17.main
2019-10-16 11:26:55 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk18.main
2019-10-16 11:26:55 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk19.main
2019-10-16 11:26:56 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk20.main
2019-10-16 11:26:56 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk21.main
2019-10-16 11:26:56 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk22.main
2019-10-16 11:26:57 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk23.main
2019-10-16 11:26:57 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk24.main
2019-10-16 11:26:57 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk25.main
2019-10-16 11:26:57 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk26.main
2019-10-16 11:26:58 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk27.main
2019-10-16 11:27:00 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk28.main
2019-10-16 11:27:00 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk29.main
2019-10-16 11:27:00 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk30.main
2019-10-16 11:27:00 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk31.main
2019-10-16 11:27:01 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk32.main
2019-10-16 11:27:01 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk33.main
2019-10-16 11:27:01 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk34.main
2019-10-16 11:27:01 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk35.main
2019-10-16 11:27:01 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk36.main
2019-10-16 11:33:01 [runtime] (update)          ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0 chunks running (0/37 completed)
2019-10-16 11:38:41 [runtime] (update)          ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0 chunks running (7/37 completed)
2019-10-16 11:45:01 [runtime] (update)          ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0 chunks running (14/37 completed)
2019-10-16 11:50:31 [runtime] (update)          ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0 chunks running (21/37 completed)
2019-10-16 11:55:32 [runtime] (update)          ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0 chunks running (27/37 completed)
2019-10-16 12:00:35 [runtime] (update)          ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0 chunks running (28/37 completed)
2019-10-16 12:04:27 [runtime] (chunks_complete) ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS
2019-10-16 12:04:28 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.join
2019-10-16 12:04:32 [runtime] (join_complete)   ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS
2019-10-16 12:04:46 [runtime] (ready)           ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS
2019-10-16 12:04:47 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.split
2019-10-16 12:04:50 [runtime] (split_complete)  ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS
2019-10-16 12:04:56 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk00.main
2019-10-16 12:04:56 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk01.main
2019-10-16 12:04:56 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk02.main
2019-10-16 12:04:57 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk03.main
2019-10-16 12:04:58 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk04.main
2019-10-16 12:04:58 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk05.main
2019-10-16 12:04:58 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk06.main
2019-10-16 12:04:59 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk07.main
2019-10-16 12:04:59 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk08.main
2019-10-16 12:05:00 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk09.main
2019-10-16 12:05:00 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk10.main
2019-10-16 12:05:01 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk11.main
2019-10-16 12:05:02 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk12.main
2019-10-16 12:05:03 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk13.main
2019-10-16 12:05:05 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk14.main
2019-10-16 12:05:06 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk15.main
2019-10-16 12:05:07 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk16.main
2019-10-16 12:05:08 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk17.main
2019-10-16 12:05:08 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk18.main
2019-10-16 12:05:09 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk19.main
2019-10-16 12:05:09 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk20.main
2019-10-16 12:05:10 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk21.main
2019-10-16 12:05:11 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk22.main
2019-10-16 12:05:12 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk23.main
2019-10-16 12:05:13 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk24.main
2019-10-16 12:05:13 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk25.main
2019-10-16 12:05:19 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk26.main
2019-10-16 12:05:20 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk27.main
2019-10-16 12:05:20 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk28.main
2019-10-16 12:05:21 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk29.main
2019-10-16 12:05:21 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk30.main
2019-10-16 12:05:22 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk31.main
2019-10-16 12:05:22 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk32.main
2019-10-16 12:05:23 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk33.main
2019-10-16 12:05:23 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk34.main
2019-10-16 12:05:23 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk35.main
2019-10-16 12:05:25 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk36.main
2019-10-16 12:11:13 [runtime] (update)          ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0 chunks running (2/37 completed)
2019-10-16 12:14:20 [runtime] (chunks_complete) ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS
2019-10-16 12:14:21 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.join
2019-10-16 12:17:46 [runtime] (join_complete)   ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS
2019-10-16 12:18:20 [runtime] (ready)           ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC
2019-10-16 12:18:20 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.split
2019-10-16 12:18:26 [runtime] (split_complete)  ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC
2019-10-16 12:18:31 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk00.main
2019-10-16 12:18:32 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk01.main
2019-10-16 12:18:32 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk02.main
2019-10-16 12:18:33 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk03.main
2019-10-16 12:18:33 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk04.main
2019-10-16 12:18:34 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk05.main
2019-10-16 12:18:34 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk06.main
2019-10-16 12:18:35 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk07.main
2019-10-16 12:18:35 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk08.main
2019-10-16 12:18:36 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk09.main
2019-10-16 12:18:38 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk10.main
2019-10-16 12:18:39 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk11.main
2019-10-16 12:18:40 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk12.main
2019-10-16 12:18:40 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk13.main
2019-10-16 12:18:40 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk14.main
2019-10-16 12:18:41 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk15.main
2019-10-16 12:18:41 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk16.main
2019-10-16 12:18:42 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk17.main
2019-10-16 12:18:42 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk18.main
2019-10-16 12:18:42 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk19.main
2019-10-16 12:18:42 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk20.main
2019-10-16 12:18:43 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk21.main
2019-10-16 12:18:43 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk22.main
2019-10-16 12:18:44 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk23.main
2019-10-16 12:18:44 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk24.main
2019-10-16 12:18:44 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk25.main
2019-10-16 12:18:44 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk26.main
2019-10-16 12:18:45 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk27.main
2019-10-16 12:18:45 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk28.main
2019-10-16 12:18:45 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk29.main
2019-10-16 12:18:45 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk30.main
2019-10-16 12:18:46 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk31.main
2019-10-16 12:18:46 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk32.main
2019-10-16 12:18:46 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk33.main
2019-10-16 12:18:46 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk34.main
2019-10-16 12:18:46 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk35.main
2019-10-16 12:18:47 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk36.main
2019-10-16 12:25:17 [runtime] (update)          ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0 chunks running (14/37 completed)
2019-10-16 12:28:41 [runtime] (chunks_complete) ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC
2019-10-16 12:28:42 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.join
2019-10-16 12:28:47 [runtime] (join_complete)   ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC
2019-10-16 12:28:53 [runtime] (ready)           ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC
2019-10-16 12:28:53 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.split
2019-10-16 12:28:57 [runtime] (split_complete)  ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC
2019-10-16 12:28:59 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk00.main
2019-10-16 12:28:59 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk01.main
2019-10-16 12:29:00 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk02.main
2019-10-16 12:29:00 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk03.main
2019-10-16 12:29:01 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk04.main
2019-10-16 12:29:01 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk05.main
2019-10-16 12:29:02 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk06.main
2019-10-16 12:29:02 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk07.main
2019-10-16 12:29:03 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk08.main
2019-10-16 12:29:03 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk09.main
2019-10-16 12:29:04 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk10.main
2019-10-16 12:29:04 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk11.main
2019-10-16 12:29:04 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk12.main
2019-10-16 12:29:05 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk13.main
2019-10-16 12:29:05 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk14.main
2019-10-16 12:29:06 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk15.main
2019-10-16 12:29:08 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk16.main
2019-10-16 12:34:08 [runtime] (update)          ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0 chunks running (1/17 completed)
2019-10-16 12:37:23 [runtime] (chunks_complete) ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC
2019-10-16 12:37:23 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.join
2019-10-16 12:42:12 [runtime] (join_complete)   ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC
2019-10-16 12:42:32 [runtime] (ready)           ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES
2019-10-16 12:42:32 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.split
2019-10-16 12:43:01 [runtime] (split_complete)  ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES
2019-10-16 12:43:06 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk00.main
2019-10-16 12:43:07 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk01.main
2019-10-16 12:43:07 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk02.main
2019-10-16 12:43:08 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk03.main
2019-10-16 12:43:08 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk04.main
2019-10-16 12:43:09 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk05.main
2019-10-16 12:43:09 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk06.main
2019-10-16 12:43:10 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk07.main
2019-10-16 12:43:12 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk08.main
2019-10-16 12:43:12 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk09.main
2019-10-16 12:43:12 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk10.main
2019-10-16 12:43:13 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk11.main
2019-10-16 12:43:13 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk12.main
2019-10-16 12:43:14 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk13.main
2019-10-16 12:43:14 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk14.main
2019-10-16 12:43:15 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk15.main
2019-10-16 12:43:16 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk16.main
2019-10-16 12:43:16 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk17.main
2019-10-16 12:43:17 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk18.main
2019-10-16 12:43:17 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk19.main
2019-10-16 12:43:18 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk20.main
2019-10-16 12:43:18 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk21.main
2019-10-16 12:43:19 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk22.main
2019-10-16 12:43:19 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk23.main
2019-10-16 12:43:20 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk24.main
2019-10-16 12:43:20 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk25.main
2019-10-16 12:43:20 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk26.main
2019-10-16 12:43:21 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk27.main
2019-10-16 12:43:21 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk28.main
2019-10-16 12:43:22 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk29.main
2019-10-16 12:43:22 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk30.main
2019-10-16 12:43:23 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk31.main
2019-10-16 12:43:23 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk32.main
2019-10-16 12:43:24 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk33.main
2019-10-16 12:43:24 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk34.main
2019-10-16 12:43:24 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk35.main
2019-10-16 12:43:24 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk36.main
2019-10-16 12:43:25 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk37.main
2019-10-16 12:43:25 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk38.main
2019-10-16 12:43:25 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk39.main
2019-10-16 12:43:26 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk40.main
2019-10-16 12:43:26 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk41.main
2019-10-16 12:43:27 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk42.main
2019-10-16 12:43:29 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk43.main
2019-10-16 12:43:30 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk44.main
2019-10-16 12:43:31 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk45.main
2019-10-16 12:43:33 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk46.main
2019-10-16 12:43:34 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk47.main
2019-10-16 12:43:35 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk48.main
2019-10-16 12:48:38 [runtime] (update)          ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0 chunks running (33/49 completed)
2019-10-16 12:48:58 [runtime] (chunks_complete) ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES
2019-10-16 12:48:58 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.join
2019-10-16 12:49:07 [runtime] (join_complete)   ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES
2019-10-16 12:49:13 [runtime] (ready)           ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES
2019-10-16 12:49:13 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.split
2019-10-16 12:49:14 [runtime] (ready)           ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS
2019-10-16 12:49:14 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.split
2019-10-16 12:49:18 [runtime] (split_complete)  ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS
2019-10-16 12:49:22 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk00.main
2019-10-16 12:49:23 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk01.main
2019-10-16 12:49:23 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk02.main
2019-10-16 12:49:24 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk03.main
2019-10-16 12:49:24 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk04.main
2019-10-16 12:49:25 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk05.main
2019-10-16 12:49:25 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk06.main
2019-10-16 12:49:26 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk07.main
2019-10-16 12:49:26 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk08.main
2019-10-16 12:49:27 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk09.main
2019-10-16 12:49:27 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk10.main
2019-10-16 12:49:28 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk11.main
2019-10-16 12:49:29 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk12.main
2019-10-16 12:49:30 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk13.main
2019-10-16 12:49:30 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk14.main
2019-10-16 12:49:31 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk15.main
2019-10-16 12:49:31 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk16.main
2019-10-16 12:49:32 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk17.main
2019-10-16 12:49:32 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk18.main
2019-10-16 12:49:33 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk19.main
2019-10-16 12:49:33 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk20.main
2019-10-16 12:49:34 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk21.main
2019-10-16 12:49:34 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk22.main
2019-10-16 12:49:35 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk23.main
2019-10-16 12:49:35 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk24.main
2019-10-16 12:49:36 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk25.main
2019-10-16 12:49:36 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk26.main
2019-10-16 12:49:37 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk27.main
2019-10-16 12:49:37 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk28.main
2019-10-16 12:49:41 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk29.main
2019-10-16 12:49:46 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk30.main
2019-10-16 12:49:55 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk31.main
2019-10-16 12:50:08 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk32.main
2019-10-16 12:50:19 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk33.main
2019-10-16 12:50:27 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk34.main
2019-10-16 12:50:33 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk35.main
2019-10-16 12:50:38 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk36.main
2019-10-16 12:50:47 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk37.main
2019-10-16 12:50:58 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk38.main
2019-10-16 12:51:08 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk39.main
2019-10-16 12:51:23 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk40.main
2019-10-16 12:51:30 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk41.main
2019-10-16 12:51:35 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk42.main
2019-10-16 12:51:41 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk43.main
2019-10-16 12:51:47 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk44.main
2019-10-16 12:51:58 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk45.main
2019-10-16 12:52:05 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk46.main
2019-10-16 12:52:18 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk47.main
2019-10-16 12:52:23 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk48.main
2019-10-16 12:53:55 [runtime] (split_complete)  ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES
2019-10-16 12:55:26 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk00.main
2019-10-16 12:55:26 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk01.main
2019-10-16 12:55:27 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk02.main
2019-10-16 12:55:27 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk03.main
2019-10-16 12:55:27 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk04.main
2019-10-16 12:55:28 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk05.main
2019-10-16 12:55:28 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk06.main
2019-10-16 12:55:29 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk07.main
2019-10-16 12:55:29 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk08.main
2019-10-16 12:55:30 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk09.main
2019-10-16 12:55:31 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk10.main
2019-10-16 12:55:31 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk11.main
2019-10-16 12:55:32 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk12.main
2019-10-16 12:55:32 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk13.main
2019-10-16 12:55:33 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk14.main
2019-10-16 12:55:33 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk15.main
2019-10-16 12:55:34 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk16.main
2019-10-16 12:55:34 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk17.main
2019-10-16 12:55:35 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk18.main
2019-10-16 12:55:35 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk19.main
2019-10-16 12:55:36 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk20.main
2019-10-16 12:55:36 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk21.main
2019-10-16 12:55:36 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk22.main
2019-10-16 12:55:37 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk23.main
2019-10-16 12:55:38 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk24.main
2019-10-16 12:55:40 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk25.main
2019-10-16 12:55:42 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk26.main
2019-10-16 12:55:46 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk27.main
2019-10-16 12:55:48 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk28.main
2019-10-16 12:55:51 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk29.main
2019-10-16 12:55:54 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk30.main
2019-10-16 12:56:02 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk31.main
2019-10-16 12:56:09 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk32.main
2019-10-16 12:56:18 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk33.main
2019-10-16 12:56:28 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk34.main
2019-10-16 12:56:33 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk35.main
2019-10-16 12:56:37 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk36.main
2019-10-16 12:56:40 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk37.main
2019-10-16 12:56:45 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk38.main
2019-10-16 12:56:50 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk39.main
2019-10-16 12:56:56 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk40.main
2019-10-16 12:57:07 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk41.main
2019-10-16 12:57:13 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk42.main
2019-10-16 12:57:16 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk43.main
2019-10-16 12:57:19 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk44.main
2019-10-16 12:57:23 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk45.main
2019-10-16 12:57:27 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk46.main
2019-10-16 12:57:32 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk47.main
2019-10-16 12:57:36 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk48.main
2019-10-16 13:00:21 [runtime] (update)          ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 chunks running (29/49 completed)
2019-10-16 13:00:25 [runtime] (chunks_complete) ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS
2019-10-16 13:00:26 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.join
2019-10-16 13:02:29 [jobmngr] Need 6 threads to start the next job (1 available).  Waiting for jobs to complete.
2019-10-16 13:02:30 [jobmngr] Need 6 threads to start the next job (2 available).  Waiting for jobs to complete.
2019-10-16 13:02:30 [jobmngr] Need 6 threads to start the next job (3 available).  Waiting for jobs to complete.
2019-10-16 13:02:30 [jobmngr] Need 6 threads to start the next job (4 available).  Waiting for jobs to complete.
2019-10-16 13:02:30 [jobmngr] Need 6 threads to start the next job (5 available).  Waiting for jobs to complete.
2019-10-16 13:02:37 [runtime] (update)          ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0 chunks running (36/49 completed)
2019-10-16 13:04:34 [runtime] (chunks_complete) ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES
2019-10-16 13:04:35 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.join
2019-10-16 13:06:34 [runtime] (update)          ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 join_running
2019-10-16 13:09:35 [runtime] (join_complete)   ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES
2019-10-16 13:09:44 [runtime] (ready)           ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES
2019-10-16 13:09:45 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES.fork0.split
2019-10-16 13:09:51 [runtime] (split_complete)  ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES
2019-10-16 13:09:52 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES.fork0.join
2019-10-16 13:12:28 [runtime] (join_complete)   ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES
2019-10-16 13:12:30 [runtime] (ready)           ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES
2019-10-16 13:12:30 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.split
2019-10-16 13:12:30 [runtime] (ready)           ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT
2019-10-16 13:12:31 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT.fork0.chnk0.main
2019-10-16 13:12:35 [runtime] (update)          ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 join_running
2019-10-16 13:12:35 [runtime] (split_complete)  ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES
2019-10-16 13:12:46 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk00.main
2019-10-16 13:12:47 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk01.main
2019-10-16 13:12:48 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk02.main
2019-10-16 13:12:48 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk03.main
2019-10-16 13:12:49 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk04.main
2019-10-16 13:12:50 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk05.main
2019-10-16 13:12:50 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk06.main
2019-10-16 13:12:51 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk07.main
2019-10-16 13:12:52 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk08.main
2019-10-16 13:12:52 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk09.main
2019-10-16 13:12:53 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk10.main
2019-10-16 13:12:53 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk11.main
2019-10-16 13:12:54 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk12.main
2019-10-16 13:12:55 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk13.main
2019-10-16 13:12:56 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk14.main
2019-10-16 13:12:57 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk15.main
2019-10-16 13:12:58 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk16.main
2019-10-16 13:12:59 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk17.main
2019-10-16 13:12:59 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk18.main
2019-10-16 13:13:00 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk19.main
2019-10-16 13:13:01 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk20.main
2019-10-16 13:13:01 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk21.main
2019-10-16 13:13:02 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk22.main
2019-10-16 13:13:02 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk23.main
2019-10-16 13:13:03 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk24.main
2019-10-16 13:13:04 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk25.main
2019-10-16 13:13:04 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk26.main
2019-10-16 13:13:05 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk27.main
2019-10-16 13:13:05 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk28.main
2019-10-16 13:13:06 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk29.main
2019-10-16 13:13:06 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk30.main
2019-10-16 13:13:06 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk31.main
2019-10-16 13:13:07 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk32.main
2019-10-16 13:13:07 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk33.main
2019-10-16 13:13:08 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk34.main
2019-10-16 13:13:08 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk35.main
2019-10-16 13:13:08 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk36.main
2019-10-16 13:13:09 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk37.main
2019-10-16 13:13:09 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk38.main
2019-10-16 13:13:10 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk39.main
2019-10-16 13:13:10 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk40.main
2019-10-16 13:13:10 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk41.main
2019-10-16 13:13:11 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk42.main
2019-10-16 13:13:11 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk43.main
2019-10-16 13:13:12 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk44.main
2019-10-16 13:13:12 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk45.main
2019-10-16 13:13:13 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk46.main
2019-10-16 13:13:13 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk47.main
2019-10-16 13:13:14 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk48.main
2019-10-16 13:13:19 [runtime] (chunks_complete) ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT
2019-10-16 13:13:21 [runtime] (ready)           ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX
2019-10-16 13:13:22 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX.fork0.split
2019-10-16 13:15:28 [runtime] (split_complete)  ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX
2019-10-16 13:15:29 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX.fork0.join
2019-10-16 13:15:43 [runtime] (join_complete)   ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX
2019-10-16 13:15:44 [runtime] (ready)           ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA
2019-10-16 13:15:45 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA.fork0.split
2019-10-16 13:15:49 [runtime] (ready)           ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_FBPCA
2019-10-16 13:15:49 [runtime] (disabled)        ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_FBPCA
2019-10-16 13:15:49 [runtime] (ready)           ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS
2019-10-16 13:15:49 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS.fork0.split
2019-10-16 13:15:50 [runtime] (ready)           ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CORRECT_CHEMISTRY_BATCH
2019-10-16 13:15:51 [runtime] (disabled)        ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CORRECT_CHEMISTRY_BATCH
2019-10-16 13:15:51 [runtime] (split_complete)  ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA
2019-10-16 13:15:52 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA.fork0.chnk0.main
2019-10-16 13:15:54 [runtime] (split_complete)  ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS
2019-10-16 13:15:55 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS.fork0.join
2019-10-16 13:16:00 [runtime] (join_complete)   ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS
2019-10-16 13:16:07 [runtime] (chunks_complete) ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA
2019-10-16 13:16:08 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA.fork0.join
2019-10-16 13:16:16 [runtime] (join_complete)   ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA
2019-10-16 13:16:18 [runtime] (ready)           ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT
2019-10-16 13:16:20 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT.fork0.chnk0.main
2019-10-16 13:16:21 [runtime] (chunks_complete) ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES
2019-10-16 13:16:23 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.join
2019-10-16 13:16:26 [runtime] (chunks_complete) ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT
2019-10-16 13:16:30 [runtime] (ready)           ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE
2019-10-16 13:16:31 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE.fork0.split
2019-10-16 13:16:31 [runtime] (ready)           ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP
2019-10-16 13:16:31 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP.fork0.split
2019-10-16 13:16:32 [runtime] (ready)           ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS
2019-10-16 13:16:32 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.split
2019-10-16 13:16:32 [runtime] (ready)           ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING
2019-10-16 13:16:33 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING.fork0.split
2019-10-16 13:16:36 [runtime] (split_complete)  ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE
2019-10-16 13:16:37 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE.fork0.chnk0.main
2019-10-16 13:16:38 [runtime] (split_complete)  ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS
2019-10-16 13:16:40 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk0.main
2019-10-16 13:16:41 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk1.main
2019-10-16 13:16:41 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk2.main
2019-10-16 13:16:42 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk3.main
2019-10-16 13:16:42 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk4.main
2019-10-16 13:16:43 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk5.main
2019-10-16 13:16:44 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk6.main
2019-10-16 13:16:45 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk7.main
2019-10-16 13:16:46 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk8.main
2019-10-16 13:16:54 [runtime] (split_complete)  ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP
2019-10-16 13:16:55 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP.fork0.chnk0.main
2019-10-16 13:16:55 [runtime] (split_complete)  ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING
2019-10-16 13:16:56 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING.fork0.chnk0.main
2019-10-16 13:16:59 [runtime] (chunks_complete) ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS
2019-10-16 13:16:59 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.join
2019-10-16 13:17:00 [runtime] (chunks_complete) ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE
2019-10-16 13:17:00 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE.fork0.join
2019-10-16 13:17:03 [runtime] (chunks_complete) ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING
2019-10-16 13:17:04 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING.fork0.join
2019-10-16 13:17:07 [runtime] (join_complete)   ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE
2019-10-16 13:17:08 [runtime] (join_complete)   ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS
2019-10-16 13:17:19 [runtime] (join_complete)   ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING
2019-10-16 13:17:20 [runtime] (ready)           ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS
2019-10-16 13:17:21 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS.fork0.split
2019-10-16 13:17:24 [runtime] (split_complete)  ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS
2019-10-16 13:17:25 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS.fork0.chnk0.main
2019-10-16 13:17:29 [runtime] (chunks_complete) ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS
2019-10-16 13:17:30 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS.fork0.join
2019-10-16 13:17:30 [runtime] (chunks_complete) ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP
2019-10-16 13:17:31 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP.fork0.join
2019-10-16 13:17:37 [runtime] (join_complete)   ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP
2019-10-16 13:17:46 [runtime] (join_complete)   ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS
2019-10-16 13:17:47 [runtime] (ready)           ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.COMBINE_CLUSTERING
2019-10-16 13:17:48 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.COMBINE_CLUSTERING.fork0.chnk0.main
2019-10-16 13:17:55 [runtime] (chunks_complete) ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.COMBINE_CLUSTERING
2019-10-16 13:17:59 [runtime] (ready)           ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION
2019-10-16 13:17:59 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.split
2019-10-16 13:18:03 [runtime] (split_complete)  ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION
2019-10-16 13:18:05 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk00.main
2019-10-16 13:18:05 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk01.main
2019-10-16 13:18:06 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk02.main
2019-10-16 13:18:07 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk03.main
2019-10-16 13:18:07 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk04.main
2019-10-16 13:18:08 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk05.main
2019-10-16 13:18:08 [jobmngr] Need 4 threads to start the next job (1 available).  Waiting for jobs to complete.
2019-10-16 13:18:09 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk06.main
2019-10-16 13:18:09 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk07.main
2019-10-16 13:18:10 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk08.main
2019-10-16 13:18:10 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk09.main
2019-10-16 13:18:14 [jobmngr] Need 4 threads to start the next job (2 available).  Waiting for jobs to complete.
2019-10-16 13:18:15 [runtime] (join_complete)   ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES
2019-10-16 13:18:20 [runtime] (ready)           ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS
2019-10-16 13:18:20 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS.fork0.split
2019-10-16 13:18:24 [jobmngr] Need 4 threads to start the next job (2 available).  Waiting for jobs to complete.
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2019-10-16 13:18:38 [runtime] (update)          ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 join_running
2019-10-16 13:18:57 [jobmngr] Need 4 threads to start the next job (2 available).  Waiting for jobs to complete.
2019-10-16 13:19:14 [runtime] (split_complete)  ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS
2019-10-16 13:19:14 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS.fork0.chnk0.main
2019-10-16 13:20:06 [runtime] (chunks_complete) ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION
2019-10-16 13:20:07 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.join
2019-10-16 13:20:20 [runtime] (join_complete)   ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION
2019-10-16 13:20:23 [runtime] (ready)           ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS
2019-10-16 13:20:23 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS.fork0.split
2019-10-16 13:20:26 [runtime] (split_complete)  ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS
2019-10-16 13:20:27 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS.fork0.chnk0.main
2019-10-16 13:20:44 [runtime] (chunks_complete) ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS
2019-10-16 13:20:45 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS.fork0.join
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2019-10-16 13:22:31 [runtime] (chunks_complete) ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS
2019-10-16 13:22:31 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS.fork0.join
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2019-10-16 13:22:37 [runtime] (ready)           ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS
2019-10-16 13:22:37 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS.fork0.split
2019-10-16 13:22:41 [runtime] (split_complete)  ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS
2019-10-16 13:22:41 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS.fork0.chnk0.main
2019-10-16 13:22:45 [runtime] (chunks_complete) ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS
2019-10-16 13:22:46 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS.fork0.join
2019-10-16 13:22:52 [runtime] (join_complete)   ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS
2019-10-16 13:22:57 [runtime] (ready)           ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.CALL_PROTOSPACERS
2019-10-16 13:22:57 [runtime] (disabled)        ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.CALL_PROTOSPACERS
2019-10-16 13:22:58 [runtime] (ready)           ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS
2019-10-16 13:23:00 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS.fork0.chnk0.main
2019-10-16 13:23:00 [runtime] (ready)           ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE
2019-10-16 13:23:00 [runtime] (disabled)        ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE
2019-10-16 13:23:00 [runtime] (ready)           ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET
2019-10-16 13:23:02 [runtime] (disabled)        ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET
2019-10-16 13:23:02 [runtime] (ready)           ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS
2019-10-16 13:23:03 [runtime] (disabled)        ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS
2019-10-16 13:23:04 [runtime] (disabled)        ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER
2019-10-16 13:23:09 [runtime] (chunks_complete) ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS
2019-10-16 13:23:14 [runtime] (ready)           ID.Nash_2_run.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS
2019-10-16 13:23:14 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS.fork0.split
2019-10-16 13:23:19 [runtime] (split_complete)  ID.Nash_2_run.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS
2019-10-16 13:23:19 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS.fork0.chnk0.main
2019-10-16 13:23:38 [runtime] (chunks_complete) ID.Nash_2_run.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS
2019-10-16 13:23:39 [runtime] (run:local)       ID.Nash_2_run.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS.fork0.join
2019-10-16 13:23:44 [runtime] (join_complete)   ID.Nash_2_run.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS
2019-10-16 13:24:37 [runtime] (update)          ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 join_running
2019-10-16 13:30:41 [runtime] (update)          ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 join_running
2019-10-16 13:33:08 [runtime] (join_complete)   ID.Nash_2_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS
2019-10-16 13:33:24 [runtime] VDR killed 2066 files, 228 GB.

Outputs:
- Run summary HTML:                         /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH2/Nash_2_run/outs/web_summary.html
- Run summary CSV:                          /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH2/Nash_2_run/outs/metrics_summary.csv
- BAM:                                      /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH2/Nash_2_run/outs/possorted_genome_bam.bam
- BAM index:                                /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH2/Nash_2_run/outs/possorted_genome_bam.bam.bai
- Filtered feature-barcode matrices MEX:    /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH2/Nash_2_run/outs/filtered_feature_bc_matrix
- Filtered feature-barcode matrices HDF5:   /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH2/Nash_2_run/outs/filtered_feature_bc_matrix.h5
- Unfiltered feature-barcode matrices MEX:  /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH2/Nash_2_run/outs/raw_feature_bc_matrix
- Unfiltered feature-barcode matrices HDF5: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH2/Nash_2_run/outs/raw_feature_bc_matrix.h5
- Secondary analysis output CSV:            /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH2/Nash_2_run/outs/analysis
- Per-molecule read information:            /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH2/Nash_2_run/outs/molecule_info.h5
- CRISPR-specific analysis:                 null
- Loupe Cell Browser file:                  /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH2/Nash_2_run/outs/cloupe.cloupe
- Feature Reference:                        null

2019-10-16 13:33:25 [perform] Serializing pipestance performance data.
Waiting 6 seconds for UI to do final refresh.
Pipestance completed successfully!

2019-10-16 13:33:32 Shutting down.
2019-10-16 13:33:32 [jobmngr] Highest memory usage observed: {
  "rss": 90710425600,
  "shared": 744824832,
  "vmem": 99501899776,
  "text": 118358016,
  "stack": 95751008256,
  "proc_count": 398
}
