@include "_sc_rna_analyzer_stages.mro"

call RUN_UMAP(
    matrix_h5 = "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH2/Nash_2_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/PREPROCESS_MATRIX/fork0/join-u0fe2a74fb1/files/preprocessed_matrix_h5.h5",
    pca_h5 = "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH2/Nash_2_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/SC_RNA_ANALYZER/CHOOSE_DIMENSION_REDUCTION_OUTPUT/fork0/chnk0-u0fe2a75063/files/pca_h5.h5",
    skip = false,
    random_seed = null,
    n_neighbors = null,
    input_pcs = null,
    max_dims = null,
    min_dist = null,
    metric = null,
    is_antibody_only = false,
)