@include "_sc_rna_analyzer_stages.mro"

call RUN_MULTIGENOME_ANALYSIS(
    raw_matrices_h5 = "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH2/Nash_2_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/COUNT_GENES/fork0/join-u0fe2a74a09/files/matrices_h5.h5",
    filtered_matrices_h5 = "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH2/Nash_2_run/SC_RNA_COUNTER_CS/SC_RNA_COUNTER/_BASIC_SC_RNA_COUNTER/FILTER_BARCODES/fork0/join-u0fe2a74ed7/files/filtered_matrices_h5.h5",
    is_multi_genome = false,
    skip = false,
)