Martian Runtime - '3.1.0-v3.2.3'
2019-10-24 23:44:09 [build  ] Built with Go version go1.12.5
2019-10-24 23:44:09 [cmdline] mrp __Nash1.mro Nash1
2019-10-24 23:44:09 [pid    ] 186190
2019-10-24 23:44:09 [environ] HOSTNAME=scc-wk4.scc.bu.edu
2019-10-24 23:44:09 [environ] SGE_TASK_STEPSIZE=undefined
2019-10-24 23:44:09 [environ] SHELL=/bin/bash
2019-10-24 23:44:09 [environ] NHOSTS=1
2019-10-24 23:44:09 [environ] SGE_O_WORKDIR=/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH1
2019-10-24 23:44:09 [environ] TMPDIR=/scratch/152248.1.mem512
2019-10-24 23:44:09 [environ] SGE_O_HOME=/usr4/spclpgm/kkarri
2019-10-24 23:44:09 [environ] SGE_ARCH=linux-x64
2019-10-24 23:44:09 [environ] SGE_CELL=default
2019-10-24 23:44:09 [environ] LC_ALL=C
2019-10-24 23:44:09 [environ] PYTHONUSERBASE=/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/lib
2019-10-24 23:44:09 [environ] USER=kkarri
2019-10-24 23:44:09 [environ] LD_LIBRARY_PATH=
2019-10-24 23:44:09 [environ] SGE_TASK_LAST=undefined
2019-10-24 23:44:09 [environ] TENX_SUBCMD=count
2019-10-24 23:44:09 [environ] TENX_PRODUCT=cellranger
2019-10-24 23:44:09 [environ] SGE_TASK_ID=undefined
2019-10-24 23:44:09 [environ] SGE_BINARY_PATH=/usr/local/ogs-ge2011.11.p1/sge_root/bin/linux-x64
2019-10-24 23:44:09 [environ] PATH=/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-tiny-fastq/3.0.0:/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-tiny-ref/3.0.0:/share/pkg.7/cellranger/3.1.0/install/bin/miniconda-cr-cs/4.3.21-miniconda-cr-cs-c10/bin:/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/lib/bin:/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/tenkit/lib/bin:/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/tenkit/bin:/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/bin:/share/pkg.7/cellranger/3.1.0/install/bin/lz4/v1.8.1.2:/share/pkg.7/cellranger/3.1.0/install/bin/martian-cs/v3.2.3/bin:/share/pkg.7/cellranger/3.1.0/install/bin/STAR/5dda596:/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-tiny-fastq/3.0.0:/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-tiny-ref/3.0.0:/share/pkg.7/cellranger/3.1.0/install/bin/miniconda-cr-cs/4.3.21-miniconda-cr-cs-c10/bin:/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/lib/bin:/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/tenkit/lib/bin:/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/tenkit/bin:/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/bin:/share/pkg.7/cellranger/3.1.0/install/bin/lz4/v1.8.1.2:/share/pkg.7/cellranger/3.1.0/install/bin/martian-cs/v3.2.3/bin:/share/pkg.7/cellranger/3.1.0/install/bin/STAR/5dda596:/share/pkg.7/cellranger/3.1.0/install/bin:/share/pkg.7/bcl2fastq/2.20/install/bin:/scratch/152248.1.mem512:/usr/java/default/jre/bin:/usr/java/default/bin:/usr/lib64/qt-3.3/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin:/opt/dell/srvadmin/bin:/bin:/usr4/spclpgm/kkarri/bin:.
2019-10-24 23:44:09 [environ] SGE_STDERR_PATH=/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH1/NASH1.o152248
2019-10-24 23:44:09 [environ] PWD=/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH1
2019-10-24 23:44:09 [environ] SGE_STDOUT_PATH=/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH1/NASH1.o152248
2019-10-24 23:44:09 [environ] SGE_ACCOUNT=sge
2019-10-24 23:44:09 [environ] LANG=C
2019-10-24 23:44:09 [environ] JOB_SCRIPT=/var/spool/sge/scc-wk4/job_scripts/152248
2019-10-24 23:44:09 [environ] JOB_NAME=NASH1
2019-10-24 23:44:09 [environ] SGE_ROOT=/usr/local/sge/sge_root
2019-10-24 23:44:09 [environ] SGE_JOB_SPOOL_DIR=/var/spool/sge/scc-wk4/active_jobs/152248.1
2019-10-24 23:44:09 [environ] ENVIRONMENT=BATCH
2019-10-24 23:44:09 [environ] SHLVL=3
2019-10-24 23:44:09 [environ] HOME=/usr4/spclpgm/kkarri
2019-10-24 23:44:09 [environ] TENX_COPYRIGHT=Copyright (c) 2019 10x Genomics, Inc.  All rights reserved.
2019-10-24 23:44:09 [environ] SGE_CWD_PATH=/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH1
2019-10-24 23:44:09 [environ] NQUEUES=1
2019-10-24 23:44:09 [environ] SGE_O_LOGNAME=kkarri
2019-10-24 23:44:09 [environ] SGE_O_MAIL=/var/spool/mail/kkarri
2019-10-24 23:44:09 [environ] PYTHONPATH=/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/tenkit/lib/python:/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/lib/python:/share/pkg.7/cellranger/3.1.0/install/bin/martian-cs/v3.2.3/adapters/python
2019-10-24 23:44:09 [environ] JOB_ID=152248
2019-10-24 23:44:09 [environ] LOGNAME=kkarri
2019-10-24 23:44:09 [environ] TENX_SCRIPTDIR=/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/bin
2019-10-24 23:44:09 [environ] TENX_BANNER=cellranger count (3.1.0)
Copyright (c) 2019 10x Genomics, Inc.  All rights reserved.
-------------------------------------------------------------------------------
2019-10-24 23:44:09 [environ] XDG_DATA_DIRS=/usr4/spclpgm/kkarri/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share:/usr/share
2019-10-24 23:44:09 [environ] SGE_TASK_FIRST=undefined
2019-10-24 23:44:09 [environ] TENX_VERSION=3.1.0
2019-10-24 23:44:09 [environ] SGE_O_PATH=/usr/java/default/jre/bin:/usr/java/default/bin:/usr/lib64/qt-3.3/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin:/opt/dell/srvadmin/bin:/bin:/usr4/spclpgm/kkarri/bin:.
2019-10-24 23:44:09 [environ] SGE_O_HOST=scc4
2019-10-24 23:44:09 [environ] SGE_O_SHELL=/bin/bash
2019-10-24 23:44:09 [environ] NSLOTS=28
2019-10-24 23:44:09 [environ] SGE_STDIN_PATH=/dev/null
2019-10-24 23:44:09 [environ] BASH_FUNC_module()=() {  eval `/usr/local/Modules/$MODULE_VERSION/bin/modulecmd bash $*`
}
2019-10-24 23:44:09 [environ] _=/share/pkg.7/cellranger/3.1.0/install/bin/martian-cs/v3.2.3/bin/mrp
2019-10-24 23:44:09 [environ] MROFLAGS=--vdrmode=rolling
2019-10-24 23:44:09 [environ] MROPATH=/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/tenkit/mro:/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro
2019-10-24 23:44:09 [version] MRO Version=3.1.0
2019-10-24 23:44:09 [options] --jobmode=local
2019-10-24 23:44:09 [options] --maxjobs=0
2019-10-24 23:44:09 [options] --jobinterval=0
2019-10-24 23:44:09 [options] --vdrmode=rolling
2019-10-24 23:44:09 [options] --stackvars=false
2019-10-24 23:44:09 [options] --zip=false
2019-10-24 23:44:09 [options] --limit-loadavg=false
2019-10-24 23:44:09 [options] --noexit=false
2019-10-24 23:44:09 [options] --nopreflight=false
2019-10-24 23:44:09 [jobmngr] Job config = /share/pkg.7/cellranger/3.1.0/install/bin/martian-cs/v3.2.3/jobmanagers/config.json
2019-10-24 23:44:09 [jobmngr] Using 28 logical cores available on system.
2019-10-24 23:44:09 [jobmngr] Using 453 GB, 90% of system memory.
2019-10-24 23:44:10 [filesys] Pipestance path /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH1/Nash1
2019-10-24 23:44:10 [filesys] Pipestance filesystem type nfs
2019-10-24 23:44:10 [filesys] 24 TB and 1,089,509,635 inodes available.
2019-10-24 23:44:10 [filesys] Pipestance filesystem nfs mount options: rw,nosuid,nodev,relatime,rw,vers=3,rsize=1048576,wsize=1048576,namlen=255,hard,proto=tcp,timeo=600,retrans=2,sec=sys,mountaddr=10.241.29.116,mountvers=3,mountport=20048,mountproto=tcp,local_lock=none,addr=10.241.29.116
2019-10-24 23:44:10 [filesys] Bin path /share/pkg.7/cellranger/3.1.0/install/bin/martian-cs/v3.2.3/bin
2019-10-24 23:44:10 [filesys] Bin filesystem type nfs
2019-10-24 23:44:10 [filesys] Bin filesystem nfs mount options: rw,nosuid,nodev,relatime,rw,vers=3,rsize=1048576,wsize=1048576,namlen=255,hard,proto=tcp,timeo=600,retrans=2,sec=sys,mountaddr=192.168.16.25,mountvers=3,mountport=890,mountproto=udp,local_lock=none,addr=192.168.16.25
Serving UI at http://scc-wk4:37533?auth=0bcYew52aPZx4mZZwk7-Iexkzb4r2YwPS6HFgXWhEUs

Running preflight checks (please wait)...
2019-10-24 23:44:10 [runtime] (ready)           ID.Nash1.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF
2019-10-24 23:44:11 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF.fork0.chnk0.main
2019-10-24 23:44:26 [runtime] (chunks_complete) ID.Nash1.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF
2019-10-24 23:44:27 [runtime] (ready)           ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CELLRANGER_PREFLIGHT
2019-10-24 23:44:27 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CELLRANGER_PREFLIGHT.fork0.chnk0.main
2019-10-24 23:44:28 [runtime] (ready)           ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CELLRANGER_PREFLIGHT_LOCAL
2019-10-24 23:44:29 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CELLRANGER_PREFLIGHT_LOCAL.fork0.chnk0.main
2019-10-24 23:44:34 [runtime] (chunks_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CELLRANGER_PREFLIGHT_LOCAL
2019-10-24 23:44:36 [runtime] (chunks_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CELLRANGER_PREFLIGHT
2019-10-24 23:44:37 [runtime] (ready)           ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.DISABLE_FEATURE_STAGES
2019-10-24 23:44:38 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.DISABLE_FEATURE_STAGES.fork0.chnk0.main
2019-10-24 23:44:38 [runtime] (ready)           ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION
2019-10-24 23:44:38 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION.fork0.chnk0.main
2019-10-24 23:44:39 [runtime] (ready)           ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY
2019-10-24 23:44:39 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0.main
2019-10-24 23:44:40 [runtime] (chunks_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.DISABLE_FEATURE_STAGES
2019-10-24 23:44:41 [runtime] (chunks_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION
2019-10-24 23:44:44 [runtime] (progress)        ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0: Indexing genome...
2019-10-24 23:45:08 [runtime] (progress)        ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0: Building transcriptome...
2019-10-24 23:45:14 [runtime] (progress)        ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0: Building kmer index...
2019-10-24 23:46:09 [runtime] (progress)        ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0: Mapping reads...
2019-10-24 23:46:21 [runtime] (chunks_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY
2019-10-24 23:46:22 [runtime] (ready)           ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS
2019-10-24 23:46:23 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS.fork0.chnk0.main
2019-10-24 23:46:27 [runtime] (chunks_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS
2019-10-24 23:46:29 [runtime] (ready)           ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY
2019-10-24 23:46:29 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY.fork0.split
2019-10-24 23:46:29 [runtime] (ready)           ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS
2019-10-24 23:46:29 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.split
2019-10-24 23:46:31 [runtime] (split_complete)  ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS
2019-10-24 23:46:31 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.chnk0.main
2019-10-24 23:46:31 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.chnk1.main
2019-10-24 23:46:32 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.chnk2.main
2019-10-24 23:46:32 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.chnk3.main
2019-10-24 23:46:42 [runtime] (split_complete)  ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY
2019-10-24 23:46:46 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY.fork0.join
2019-10-24 23:47:11 [runtime] (join_complete)   ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY
2019-10-24 23:51:24 [runtime] (chunks_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS
2019-10-24 23:51:24 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.join
2019-10-24 23:51:25 [runtime] (join_complete)   ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS
2019-10-24 23:51:26 [runtime] (ready)           ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS
2019-10-24 23:51:27 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.split
2019-10-24 23:51:32 [runtime] (split_complete)  ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS
2019-10-24 23:51:35 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk00.main
2019-10-24 23:51:35 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk01.main
2019-10-24 23:51:37 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk02.main
2019-10-24 23:51:38 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk03.main
2019-10-24 23:51:38 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk04.main
2019-10-24 23:51:38 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk05.main
2019-10-24 23:51:39 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk06.main
2019-10-24 23:51:39 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk07.main
2019-10-24 23:51:39 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk08.main
2019-10-24 23:51:40 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk09.main
2019-10-24 23:51:40 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk10.main
2019-10-24 23:51:40 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk11.main
2019-10-24 23:51:41 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk12.main
2019-10-24 23:51:41 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk13.main
2019-10-24 23:51:41 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk14.main
2019-10-24 23:51:42 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk15.main
2019-10-24 23:51:42 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk16.main
2019-10-24 23:51:43 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk17.main
2019-10-24 23:51:43 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk18.main
2019-10-24 23:51:44 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk19.main
2019-10-24 23:51:44 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk20.main
2019-10-24 23:51:44 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk21.main
2019-10-24 23:51:45 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk22.main
2019-10-24 23:51:45 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk23.main
2019-10-24 23:51:46 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk24.main
2019-10-24 23:51:46 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk25.main
2019-10-24 23:51:46 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk26.main
2019-10-24 23:51:46 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk27.main
2019-10-24 23:56:53 [runtime] (update)          ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0 chunks running (1/28 completed)
2019-10-24 23:58:50 [runtime] (chunks_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS
2019-10-24 23:58:51 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.join
2019-10-24 23:59:05 [runtime] (join_complete)   ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS
2019-10-24 23:59:10 [runtime] (ready)           ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS
2019-10-24 23:59:10 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.split
2019-10-24 23:59:14 [runtime] (split_complete)  ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS
2019-10-24 23:59:16 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk00.main
2019-10-24 23:59:17 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk01.main
2019-10-24 23:59:17 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk02.main
2019-10-24 23:59:18 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk03.main
2019-10-24 23:59:18 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk04.main
2019-10-24 23:59:19 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk05.main
2019-10-24 23:59:19 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk06.main
2019-10-24 23:59:20 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk07.main
2019-10-24 23:59:20 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk08.main
2019-10-24 23:59:21 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk09.main
2019-10-24 23:59:22 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk10.main
2019-10-24 23:59:25 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk11.main
2019-10-24 23:59:27 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk12.main
2019-10-24 23:59:29 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk13.main
2019-10-24 23:59:31 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk14.main
2019-10-24 23:59:35 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk15.main
2019-10-24 23:59:39 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk16.main
2019-10-24 23:59:41 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk17.main
2019-10-24 23:59:43 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk18.main
2019-10-24 23:59:45 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk19.main
2019-10-24 23:59:46 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk20.main
2019-10-24 23:59:47 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk21.main
2019-10-24 23:59:48 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk22.main
2019-10-24 23:59:48 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk23.main
2019-10-24 23:59:48 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk24.main
2019-10-24 23:59:49 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk25.main
2019-10-24 23:59:49 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk26.main
2019-10-24 23:59:50 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk27.main
2019-10-25 00:00:36 [runtime] (chunks_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS
2019-10-25 00:00:37 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.join
2019-10-25 00:00:42 [runtime] (join_complete)   ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS
2019-10-25 00:00:43 [runtime] (ready)           ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS
2019-10-25 00:00:43 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.split
2019-10-25 00:00:46 [runtime] (split_complete)  ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS
2019-10-25 00:00:49 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk00.main
2019-10-25 00:00:49 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk01.main
2019-10-25 00:00:49 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk02.main
2019-10-25 00:00:50 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk03.main
2019-10-25 00:00:50 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk04.main
2019-10-25 00:00:50 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk05.main
2019-10-25 00:00:51 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk06.main
2019-10-25 00:00:52 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk07.main
2019-10-25 00:00:52 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk08.main
2019-10-25 00:00:52 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk09.main
2019-10-25 00:00:53 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk10.main
2019-10-25 00:00:53 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk11.main
2019-10-25 00:00:53 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk12.main
2019-10-25 00:00:54 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk13.main
2019-10-25 00:00:54 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk14.main
2019-10-25 00:00:54 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk15.main
2019-10-25 00:00:54 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk16.main
2019-10-25 00:00:54 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk17.main
2019-10-25 00:00:55 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk18.main
2019-10-25 00:00:55 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk19.main
2019-10-25 00:00:55 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk20.main
2019-10-25 00:00:55 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk21.main
2019-10-25 00:00:56 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk22.main
2019-10-25 00:00:56 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk23.main
2019-10-25 00:00:56 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk24.main
2019-10-25 00:00:56 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk25.main
2019-10-25 00:00:56 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk26.main
2019-10-25 00:00:57 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk27.main
2019-10-25 00:06:16 [runtime] (update)          ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0 chunks running (1/28 completed)
2019-10-25 00:11:43 [runtime] (update)          ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0 chunks running (14/28 completed)
2019-10-25 00:17:18 [runtime] (update)          ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0 chunks running (21/28 completed)
2019-10-25 00:20:41 [runtime] (chunks_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS
2019-10-25 00:20:41 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.join
2019-10-25 00:20:45 [runtime] (join_complete)   ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS
2019-10-25 00:20:53 [runtime] (ready)           ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS
2019-10-25 00:20:53 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.split
2019-10-25 00:20:57 [runtime] (split_complete)  ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS
2019-10-25 00:21:00 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk00.main
2019-10-25 00:21:00 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk01.main
2019-10-25 00:21:00 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk02.main
2019-10-25 00:21:01 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk03.main
2019-10-25 00:21:01 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk04.main
2019-10-25 00:21:02 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk05.main
2019-10-25 00:21:02 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk06.main
2019-10-25 00:21:02 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk07.main
2019-10-25 00:21:03 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk08.main
2019-10-25 00:21:03 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk09.main
2019-10-25 00:21:03 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk10.main
2019-10-25 00:21:04 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk11.main
2019-10-25 00:21:04 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk12.main
2019-10-25 00:21:05 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk13.main
2019-10-25 00:21:05 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk14.main
2019-10-25 00:21:06 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk15.main
2019-10-25 00:21:06 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk16.main
2019-10-25 00:21:07 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk17.main
2019-10-25 00:21:08 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk18.main
2019-10-25 00:21:09 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk19.main
2019-10-25 00:21:09 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk20.main
2019-10-25 00:21:10 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk21.main
2019-10-25 00:21:13 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk22.main
2019-10-25 00:21:14 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk23.main
2019-10-25 00:21:15 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk24.main
2019-10-25 00:21:15 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk25.main
2019-10-25 00:21:15 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk26.main
2019-10-25 00:21:16 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk27.main
2019-10-25 00:26:17 [runtime] (update)          ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0 chunks running (13/28 completed)
2019-10-25 00:26:34 [runtime] (chunks_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS
2019-10-25 00:26:34 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.join
2019-10-25 00:30:23 [runtime] (join_complete)   ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS
2019-10-25 00:30:31 [runtime] (ready)           ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC
2019-10-25 00:30:32 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.split
2019-10-25 00:30:36 [runtime] (split_complete)  ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC
2019-10-25 00:30:39 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk00.main
2019-10-25 00:30:39 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk01.main
2019-10-25 00:30:39 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk02.main
2019-10-25 00:30:40 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk03.main
2019-10-25 00:30:40 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk04.main
2019-10-25 00:30:41 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk05.main
2019-10-25 00:30:41 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk06.main
2019-10-25 00:30:43 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk07.main
2019-10-25 00:30:44 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk08.main
2019-10-25 00:30:44 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk09.main
2019-10-25 00:30:44 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk10.main
2019-10-25 00:30:45 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk11.main
2019-10-25 00:30:45 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk12.main
2019-10-25 00:30:46 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk13.main
2019-10-25 00:30:46 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk14.main
2019-10-25 00:30:46 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk15.main
2019-10-25 00:30:47 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk16.main
2019-10-25 00:30:47 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk17.main
2019-10-25 00:30:47 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk18.main
2019-10-25 00:30:48 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk19.main
2019-10-25 00:30:48 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk20.main
2019-10-25 00:30:48 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk21.main
2019-10-25 00:30:48 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk22.main
2019-10-25 00:30:49 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk23.main
2019-10-25 00:30:49 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk24.main
2019-10-25 00:30:49 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk25.main
2019-10-25 00:30:49 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk26.main
2019-10-25 00:30:50 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk27.main
2019-10-25 00:36:15 [runtime] (update)          ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0 chunks running (14/28 completed)
2019-10-25 00:38:46 [runtime] (chunks_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC
2019-10-25 00:38:47 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.join
2019-10-25 00:38:51 [runtime] (join_complete)   ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC
2019-10-25 00:38:56 [runtime] (ready)           ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC
2019-10-25 00:38:56 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.split
2019-10-25 00:38:59 [runtime] (split_complete)  ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC
2019-10-25 00:39:01 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk00.main
2019-10-25 00:39:01 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk01.main
2019-10-25 00:39:01 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk02.main
2019-10-25 00:39:02 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk03.main
2019-10-25 00:39:02 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk04.main
2019-10-25 00:39:03 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk05.main
2019-10-25 00:39:03 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk06.main
2019-10-25 00:39:04 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk07.main
2019-10-25 00:39:04 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk08.main
2019-10-25 00:39:05 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk09.main
2019-10-25 00:39:05 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk10.main
2019-10-25 00:39:06 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk11.main
2019-10-25 00:39:06 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk12.main
2019-10-25 00:39:06 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk13.main
2019-10-25 00:39:07 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk14.main
2019-10-25 00:39:07 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk15.main
2019-10-25 00:39:07 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk16.main
2019-10-25 00:44:08 [runtime] (update)          ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0 chunks running (8/17 completed)
2019-10-25 00:47:31 [runtime] (chunks_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC
2019-10-25 00:47:31 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.join
2019-10-25 00:50:49 [runtime] (join_complete)   ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC
2019-10-25 00:51:01 [runtime] (ready)           ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES
2019-10-25 00:51:01 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.split
2019-10-25 00:51:22 [runtime] (split_complete)  ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES
2019-10-25 00:51:26 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk00.main
2019-10-25 00:51:26 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk01.main
2019-10-25 00:51:26 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk02.main
2019-10-25 00:51:27 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk03.main
2019-10-25 00:51:27 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk04.main
2019-10-25 00:51:28 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk05.main
2019-10-25 00:51:28 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk06.main
2019-10-25 00:51:28 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk07.main
2019-10-25 00:51:29 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk08.main
2019-10-25 00:51:29 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk09.main
2019-10-25 00:51:30 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk10.main
2019-10-25 00:51:30 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk11.main
2019-10-25 00:51:30 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk12.main
2019-10-25 00:51:31 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk13.main
2019-10-25 00:51:31 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk14.main
2019-10-25 00:51:32 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk15.main
2019-10-25 00:51:32 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk16.main
2019-10-25 00:51:32 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk17.main
2019-10-25 00:51:33 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk18.main
2019-10-25 00:51:34 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk19.main
2019-10-25 00:51:34 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk20.main
2019-10-25 00:51:35 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk21.main
2019-10-25 00:51:35 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk22.main
2019-10-25 00:51:36 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk23.main
2019-10-25 00:51:36 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk24.main
2019-10-25 00:51:37 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk25.main
2019-10-25 00:51:37 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk26.main
2019-10-25 00:51:37 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk27.main
2019-10-25 00:51:38 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk28.main
2019-10-25 00:51:38 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk29.main
2019-10-25 00:51:38 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk30.main
2019-10-25 00:51:38 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk31.main
2019-10-25 00:51:39 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk32.main
2019-10-25 00:51:39 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk33.main
2019-10-25 00:51:39 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk34.main
2019-10-25 00:51:39 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk35.main
2019-10-25 00:51:40 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk36.main
2019-10-25 00:51:40 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk37.main
2019-10-25 00:51:40 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk38.main
2019-10-25 00:51:40 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk39.main
2019-10-25 00:51:40 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk40.main
2019-10-25 00:51:41 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk41.main
2019-10-25 00:56:25 [runtime] (chunks_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES
2019-10-25 00:56:25 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.join
2019-10-25 00:56:32 [runtime] (join_complete)   ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES
2019-10-25 00:56:36 [runtime] (ready)           ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES
2019-10-25 00:56:36 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.split
2019-10-25 00:56:36 [runtime] (ready)           ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS
2019-10-25 00:56:37 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.split
2019-10-25 00:56:40 [runtime] (split_complete)  ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS
2019-10-25 00:56:43 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk00.main
2019-10-25 00:56:43 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk01.main
2019-10-25 00:56:44 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk02.main
2019-10-25 00:56:44 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk03.main
2019-10-25 00:56:45 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk04.main
2019-10-25 00:56:45 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk05.main
2019-10-25 00:56:46 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk06.main
2019-10-25 00:56:48 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk07.main
2019-10-25 00:56:48 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk08.main
2019-10-25 00:56:49 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk09.main
2019-10-25 00:56:49 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk10.main
2019-10-25 00:56:49 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk11.main
2019-10-25 00:56:50 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk12.main
2019-10-25 00:56:50 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk13.main
2019-10-25 00:56:51 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk14.main
2019-10-25 00:56:51 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk15.main
2019-10-25 00:56:51 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk16.main
2019-10-25 00:56:52 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk17.main
2019-10-25 00:56:52 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk18.main
2019-10-25 00:56:53 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk19.main
2019-10-25 00:56:53 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk20.main
2019-10-25 00:56:53 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk21.main
2019-10-25 00:56:54 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk22.main
2019-10-25 00:56:54 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk23.main
2019-10-25 00:56:55 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk24.main
2019-10-25 00:56:55 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk25.main
2019-10-25 00:56:56 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk26.main
2019-10-25 00:56:56 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk27.main
2019-10-25 00:56:56 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk28.main
2019-10-25 00:56:57 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk29.main
2019-10-25 00:56:57 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk30.main
2019-10-25 00:56:57 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk31.main
2019-10-25 00:56:57 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk32.main
2019-10-25 00:56:58 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk33.main
2019-10-25 00:56:58 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk34.main
2019-10-25 00:56:58 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk35.main
2019-10-25 00:56:58 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk36.main
2019-10-25 00:56:59 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk37.main
2019-10-25 00:56:59 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk38.main
2019-10-25 00:57:00 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk39.main
2019-10-25 00:57:02 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk40.main
2019-10-25 00:57:04 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk41.main
2019-10-25 00:58:04 [runtime] (split_complete)  ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES
2019-10-25 01:00:13 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk00.main
2019-10-25 01:00:18 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk01.main
2019-10-25 01:00:24 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk02.main
2019-10-25 01:00:29 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk03.main
2019-10-25 01:00:35 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk04.main
2019-10-25 01:00:40 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk05.main
2019-10-25 01:00:45 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk06.main
2019-10-25 01:00:51 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk07.main
2019-10-25 01:00:56 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk08.main
2019-10-25 01:01:01 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk09.main
2019-10-25 01:01:07 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk10.main
2019-10-25 01:01:13 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk11.main
2019-10-25 01:01:18 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk12.main
2019-10-25 01:01:22 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk13.main
2019-10-25 01:01:26 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk14.main
2019-10-25 01:01:29 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk15.main
2019-10-25 01:01:32 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk16.main
2019-10-25 01:01:35 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk17.main
2019-10-25 01:01:38 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk18.main
2019-10-25 01:01:40 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk19.main
2019-10-25 01:01:43 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk20.main
2019-10-25 01:01:44 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk21.main
2019-10-25 01:01:45 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk22.main
2019-10-25 01:01:46 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk23.main
2019-10-25 01:01:47 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk24.main
2019-10-25 01:01:49 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk25.main
2019-10-25 01:01:49 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk26.main
2019-10-25 01:01:49 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk27.main
2019-10-25 01:01:49 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk28.main
2019-10-25 01:01:50 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk29.main
2019-10-25 01:01:50 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk30.main
2019-10-25 01:01:51 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk31.main
2019-10-25 01:01:51 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk32.main
2019-10-25 01:01:51 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk33.main
2019-10-25 01:01:52 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk34.main
2019-10-25 01:01:52 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk35.main
2019-10-25 01:01:52 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk36.main
2019-10-25 01:01:53 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk37.main
2019-10-25 01:01:53 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk38.main
2019-10-25 01:01:54 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk39.main
2019-10-25 01:01:54 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk40.main
2019-10-25 01:01:54 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk41.main
2019-10-25 01:02:05 [runtime] (update)          ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 chunks running (24/42 completed)
2019-10-25 01:05:16 [runtime] (chunks_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS
2019-10-25 01:05:16 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.join
2019-10-25 01:05:16 [jobmngr] Need 6 threads to start the next job (1 available).  Waiting for jobs to complete.
2019-10-25 01:05:35 [jobmngr] Need 6 threads to start the next job (2 available).  Waiting for jobs to complete.
2019-10-25 01:06:00 [jobmngr] Need 6 threads to start the next job (3 available).  Waiting for jobs to complete.
2019-10-25 01:06:57 [runtime] (update)          ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0 chunks running (17/42 completed)
2019-10-25 01:07:25 [jobmngr] Need 6 threads to start the next job (4 available).  Waiting for jobs to complete.
2019-10-25 01:07:25 [jobmngr] Need 6 threads to start the next job (5 available).  Waiting for jobs to complete.
2019-10-25 01:07:39 [runtime] (chunks_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES
2019-10-25 01:07:40 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.join
2019-10-25 01:11:33 [runtime] (update)          ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 join_running
2019-10-25 01:12:14 [runtime] (join_complete)   ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES
2019-10-25 01:12:21 [runtime] (ready)           ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES
2019-10-25 01:12:21 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES.fork0.split
2019-10-25 01:12:26 [runtime] (split_complete)  ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES
2019-10-25 01:12:26 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES.fork0.join
2019-10-25 01:15:05 [runtime] (join_complete)   ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES
2019-10-25 01:15:06 [runtime] (ready)           ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES
2019-10-25 01:15:06 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.split
2019-10-25 01:15:06 [runtime] (ready)           ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT
2019-10-25 01:15:08 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT.fork0.chnk0.main
2019-10-25 01:15:12 [runtime] (split_complete)  ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES
2019-10-25 01:15:17 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk00.main
2019-10-25 01:15:17 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk01.main
2019-10-25 01:15:18 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk02.main
2019-10-25 01:15:18 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk03.main
2019-10-25 01:15:20 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk04.main
2019-10-25 01:15:21 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk05.main
2019-10-25 01:15:21 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk06.main
2019-10-25 01:15:21 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk07.main
2019-10-25 01:15:22 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk08.main
2019-10-25 01:15:22 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk09.main
2019-10-25 01:15:23 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk10.main
2019-10-25 01:15:23 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk11.main
2019-10-25 01:15:24 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk12.main
2019-10-25 01:15:24 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk13.main
2019-10-25 01:15:25 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk14.main
2019-10-25 01:15:26 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk15.main
2019-10-25 01:15:27 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk16.main
2019-10-25 01:15:27 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk17.main
2019-10-25 01:15:28 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk18.main
2019-10-25 01:15:28 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk19.main
2019-10-25 01:15:29 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk20.main
2019-10-25 01:15:29 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk21.main
2019-10-25 01:15:30 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk22.main
2019-10-25 01:15:30 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk23.main
2019-10-25 01:15:31 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk24.main
2019-10-25 01:15:31 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk25.main
2019-10-25 01:15:31 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk26.main
2019-10-25 01:15:32 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk27.main
2019-10-25 01:15:32 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk28.main
2019-10-25 01:15:33 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk29.main
2019-10-25 01:15:33 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk30.main
2019-10-25 01:15:33 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk31.main
2019-10-25 01:15:34 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk32.main
2019-10-25 01:15:34 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk33.main
2019-10-25 01:15:34 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk34.main
2019-10-25 01:15:35 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk35.main
2019-10-25 01:15:35 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk36.main
2019-10-25 01:15:35 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk37.main
2019-10-25 01:15:35 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk38.main
2019-10-25 01:15:36 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk39.main
2019-10-25 01:15:36 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk40.main
2019-10-25 01:15:36 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk41.main
2019-10-25 01:15:39 [runtime] (chunks_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT
2019-10-25 01:15:40 [runtime] (ready)           ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX
2019-10-25 01:15:40 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX.fork0.split
2019-10-25 01:16:57 [runtime] (split_complete)  ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX
2019-10-25 01:16:58 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX.fork0.join
2019-10-25 01:17:11 [runtime] (join_complete)   ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX
2019-10-25 01:17:12 [runtime] (ready)           ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_FBPCA
2019-10-25 01:17:12 [runtime] (disabled)        ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_FBPCA
2019-10-25 01:17:13 [runtime] (ready)           ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA
2019-10-25 01:17:13 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA.fork0.split
2019-10-25 01:17:13 [runtime] (ready)           ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS
2019-10-25 01:17:13 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS.fork0.split
2019-10-25 01:17:14 [runtime] (ready)           ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CORRECT_CHEMISTRY_BATCH
2019-10-25 01:17:14 [runtime] (disabled)        ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CORRECT_CHEMISTRY_BATCH
2019-10-25 01:17:18 [runtime] (split_complete)  ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA
2019-10-25 01:17:18 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA.fork0.chnk0.main
2019-10-25 01:17:18 [runtime] (split_complete)  ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS
2019-10-25 01:17:19 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS.fork0.join
2019-10-25 01:17:23 [runtime] (join_complete)   ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS
2019-10-25 01:17:32 [runtime] (update)          ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 join_running
2019-10-25 01:17:35 [runtime] (chunks_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA
2019-10-25 01:17:35 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA.fork0.join
2019-10-25 01:17:42 [runtime] (join_complete)   ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA
2019-10-25 01:17:43 [runtime] (ready)           ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT
2019-10-25 01:17:43 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT.fork0.chnk0.main
2019-10-25 01:17:48 [runtime] (chunks_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT
2019-10-25 01:17:52 [runtime] (ready)           ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING
2019-10-25 01:17:52 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING.fork0.split
2019-10-25 01:17:52 [runtime] (ready)           ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE
2019-10-25 01:17:53 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE.fork0.split
2019-10-25 01:17:53 [runtime] (ready)           ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP
2019-10-25 01:17:53 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP.fork0.split
2019-10-25 01:17:54 [runtime] (ready)           ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS
2019-10-25 01:17:54 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.split
2019-10-25 01:17:59 [runtime] (split_complete)  ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE
2019-10-25 01:18:00 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE.fork0.chnk0.main
2019-10-25 01:18:00 [runtime] (split_complete)  ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING
2019-10-25 01:18:00 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING.fork0.chnk0.main
2019-10-25 01:18:00 [runtime] (split_complete)  ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS
2019-10-25 01:18:02 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk0.main
2019-10-25 01:18:04 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk1.main
2019-10-25 01:18:05 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk2.main
2019-10-25 01:18:07 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk3.main
2019-10-25 01:18:08 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk4.main
2019-10-25 01:18:09 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk5.main
2019-10-25 01:18:10 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk6.main
2019-10-25 01:18:10 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk7.main
2019-10-25 01:18:11 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk8.main
2019-10-25 01:18:18 [runtime] (split_complete)  ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP
2019-10-25 01:18:18 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP.fork0.chnk0.main
2019-10-25 01:18:26 [runtime] (chunks_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES
2019-10-25 01:18:27 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.join
2019-10-25 01:18:27 [runtime] (chunks_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING
2019-10-25 01:18:27 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING.fork0.join
2019-10-25 01:18:29 [runtime] (chunks_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS
2019-10-25 01:18:29 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.join
2019-10-25 01:18:36 [runtime] (chunks_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE
2019-10-25 01:18:37 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE.fork0.join
2019-10-25 01:18:37 [runtime] (join_complete)   ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS
2019-10-25 01:18:42 [runtime] (join_complete)   ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE
2019-10-25 01:18:44 [runtime] (join_complete)   ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING
2019-10-25 01:18:45 [runtime] (ready)           ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS
2019-10-25 01:18:45 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS.fork0.split
2019-10-25 01:18:51 [runtime] (split_complete)  ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS
2019-10-25 01:18:51 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS.fork0.chnk0.main
2019-10-25 01:18:56 [runtime] (chunks_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS
2019-10-25 01:18:57 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS.fork0.join
2019-10-25 01:19:09 [runtime] (chunks_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP
2019-10-25 01:19:10 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP.fork0.join
2019-10-25 01:19:13 [runtime] (join_complete)   ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS
2019-10-25 01:19:13 [runtime] (ready)           ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.COMBINE_CLUSTERING
2019-10-25 01:19:14 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.COMBINE_CLUSTERING.fork0.chnk0.main
2019-10-25 01:19:17 [runtime] (join_complete)   ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP
2019-10-25 01:19:21 [runtime] (chunks_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.COMBINE_CLUSTERING
2019-10-25 01:19:23 [runtime] (ready)           ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION
2019-10-25 01:19:23 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.split
2019-10-25 01:19:28 [runtime] (split_complete)  ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION
2019-10-25 01:19:29 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk00.main
2019-10-25 01:19:29 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk01.main
2019-10-25 01:19:30 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk02.main
2019-10-25 01:19:31 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk03.main
2019-10-25 01:19:31 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk04.main
2019-10-25 01:19:32 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk05.main
2019-10-25 01:19:32 [jobmngr] Need 4 threads to start the next job (1 available).  Waiting for jobs to complete.
2019-10-25 01:19:32 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk06.main
2019-10-25 01:19:33 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk07.main
2019-10-25 01:19:33 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk08.main
2019-10-25 01:19:34 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk09.main
2019-10-25 01:19:46 [jobmngr] Need 4 threads to start the next job (1 available).  Waiting for jobs to complete.
2019-10-25 01:19:52 [jobmngr] Need 4 threads to start the next job (1 available).  Waiting for jobs to complete.
2019-10-25 01:19:58 [jobmngr] Need 4 threads to start the next job (1 available).  Waiting for jobs to complete.
2019-10-25 01:20:12 [jobmngr] Need 4 threads to start the next job (2 available).  Waiting for jobs to complete.
2019-10-25 01:20:12 [runtime] (join_complete)   ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES
2019-10-25 01:20:15 [runtime] (ready)           ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS
2019-10-25 01:20:15 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS.fork0.split
2019-10-25 01:20:21 [jobmngr] Need 4 threads to start the next job (2 available).  Waiting for jobs to complete.
2019-10-25 01:20:41 [runtime] (split_complete)  ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS
2019-10-25 01:20:42 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS.fork0.chnk0.main
2019-10-25 01:21:39 [runtime] (chunks_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION
2019-10-25 01:21:40 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.join
2019-10-25 01:21:51 [runtime] (join_complete)   ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION
2019-10-25 01:21:54 [runtime] (ready)           ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS
2019-10-25 01:21:54 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS.fork0.split
2019-10-25 01:21:58 [runtime] (split_complete)  ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS
2019-10-25 01:21:58 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS.fork0.chnk0.main
2019-10-25 01:22:13 [runtime] (chunks_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS
2019-10-25 01:22:13 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS.fork0.join
2019-10-25 01:22:27 [runtime] (join_complete)   ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS
2019-10-25 01:23:32 [runtime] (update)          ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 join_running
2019-10-25 01:24:24 [runtime] (chunks_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS
2019-10-25 01:24:25 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS.fork0.join
2019-10-25 01:24:30 [runtime] (join_complete)   ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS
2019-10-25 01:24:31 [runtime] (ready)           ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS
2019-10-25 01:24:31 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS.fork0.split
2019-10-25 01:24:35 [runtime] (split_complete)  ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS
2019-10-25 01:24:35 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS.fork0.chnk0.main
2019-10-25 01:24:39 [runtime] (chunks_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS
2019-10-25 01:24:40 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS.fork0.join
2019-10-25 01:24:44 [runtime] (join_complete)   ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS
2019-10-25 01:24:48 [runtime] (ready)           ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.CALL_PROTOSPACERS
2019-10-25 01:24:48 [runtime] (disabled)        ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.CALL_PROTOSPACERS
2019-10-25 01:24:49 [runtime] (ready)           ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET
2019-10-25 01:24:49 [runtime] (disabled)        ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET
2019-10-25 01:24:49 [runtime] (ready)           ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE
2019-10-25 01:24:49 [runtime] (disabled)        ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE
2019-10-25 01:24:50 [runtime] (ready)           ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS
2019-10-25 01:24:50 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS.fork0.chnk0.main
2019-10-25 01:24:52 [runtime] (ready)           ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS
2019-10-25 01:24:52 [runtime] (disabled)        ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS
2019-10-25 01:24:53 [runtime] (disabled)        ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER
2019-10-25 01:25:01 [runtime] (chunks_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS
2019-10-25 01:25:04 [runtime] (ready)           ID.Nash1.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS
2019-10-25 01:25:04 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS.fork0.split
2019-10-25 01:25:09 [runtime] (split_complete)  ID.Nash1.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS
2019-10-25 01:25:09 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS.fork0.chnk0.main
2019-10-25 01:25:35 [runtime] (chunks_complete) ID.Nash1.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS
2019-10-25 01:25:35 [runtime] (run:local)       ID.Nash1.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS.fork0.join
2019-10-25 01:25:41 [runtime] (join_complete)   ID.Nash1.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS
2019-10-25 01:29:34 [runtime] (update)          ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 join_running
2019-10-25 01:32:10 [runtime] (join_complete)   ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS
2019-10-25 01:32:24 [runtime] VDR killed 1651 files, 178 GB.

Outputs:
- Run summary HTML:                         /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH1/Nash1/outs/web_summary.html
- Run summary CSV:                          /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH1/Nash1/outs/metrics_summary.csv
- BAM:                                      /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH1/Nash1/outs/possorted_genome_bam.bam
- BAM index:                                /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH1/Nash1/outs/possorted_genome_bam.bam.bai
- Filtered feature-barcode matrices MEX:    /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH1/Nash1/outs/filtered_feature_bc_matrix
- Filtered feature-barcode matrices HDF5:   /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH1/Nash1/outs/filtered_feature_bc_matrix.h5
- Unfiltered feature-barcode matrices MEX:  /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH1/Nash1/outs/raw_feature_bc_matrix
- Unfiltered feature-barcode matrices HDF5: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH1/Nash1/outs/raw_feature_bc_matrix.h5
- Secondary analysis output CSV:            /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH1/Nash1/outs/analysis
- Per-molecule read information:            /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH1/Nash1/outs/molecule_info.h5
- CRISPR-specific analysis:                 null
- Loupe Cell Browser file:                  /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH1/Nash1/outs/cloupe.cloupe
- Feature Reference:                        null

2019-10-25 01:32:24 [perform] Serializing pipestance performance data.
Waiting 6 seconds for UI to do final refresh.
Pipestance completed successfully!

2019-10-25 01:32:31 Shutting down.
2019-10-25 01:32:31 [jobmngr] Highest memory usage observed: {
  "rss": 90515283968,
  "shared": 722313216,
  "vmem": 98940203008,
  "text": 118358016,
  "stack": 95171244032,
  "proc_count": 354
}
