========================================================== Starting on : Thu Oct 24 23:44:04 EDT 2019 Running on node : scc-wk4 Current job ID : 152248 Current job name : NASH1 Task index number : ========================================================== /share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/bin cellranger count (3.1.0) Copyright (c) 2019 10x Genomics, Inc. All rights reserved. ------------------------------------------------------------------------------- Martian Runtime - '3.1.0-v3.2.3' Serving UI at http://scc-wk4:37533?auth=0bcYew52aPZx4mZZwk7-Iexkzb4r2YwPS6HFgXWhEUs Running preflight checks (please wait)... 2019-10-24 23:44:10 [runtime] (ready) ID.Nash1.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF 2019-10-24 23:44:11 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF.fork0.chnk0.main 2019-10-24 23:44:26 [runtime] (chunks_complete) ID.Nash1.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF Checking sample info... Checking FASTQ folder... Checking libraries... Checking reference... Checking reference_path (/restricted/projectnb/waxmanlab/kkarri/tabula_muris/drop-seq/mm10_ref/updated-usethis-mm10plus-pcg-ercc-lnc-nodups) on scc-wk4... Checking chemistry... Checking optional arguments... mrc: '3.1.0-v3.2.3' mrp: '3.1.0-v3.2.3' Anaconda: Python 2.7.14 :: Anaconda, Inc. numpy: 1.14.2 scipy: 1.0.1 pysam: 0.14.1 h5py: 2.8.0 pandas: 0.22.0 STAR: STAR_2.5.1b samtools: samtools 1.7 Using htslib 1.7 Copyright (C) 2018 Genome Research Ltd. 2019-10-24 23:44:37 [runtime] (ready) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.DISABLE_FEATURE_STAGES 2019-10-24 23:44:38 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.DISABLE_FEATURE_STAGES.fork0.chnk0.main 2019-10-24 23:44:38 [runtime] (ready) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION 2019-10-24 23:44:38 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION.fork0.chnk0.main 2019-10-24 23:44:39 [runtime] (ready) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY 2019-10-24 23:44:39 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0.main 2019-10-24 23:44:40 [runtime] (chunks_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.DISABLE_FEATURE_STAGES 2019-10-24 23:44:41 [runtime] (chunks_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION 2019-10-24 23:44:44 [runtime] (progress) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0: Indexing genome... 2019-10-24 23:45:08 [runtime] (progress) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0: Building transcriptome... 2019-10-24 23:45:14 [runtime] (progress) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0: Building kmer index... 2019-10-24 23:46:09 [runtime] (progress) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0: Mapping reads... 2019-10-24 23:46:21 [runtime] (chunks_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY 2019-10-24 23:46:22 [runtime] (ready) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS 2019-10-24 23:46:23 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS.fork0.chnk0.main 2019-10-24 23:46:27 [runtime] (chunks_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS 2019-10-24 23:46:29 [runtime] (ready) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY 2019-10-24 23:46:29 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY.fork0.split 2019-10-24 23:46:29 [runtime] (ready) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS 2019-10-24 23:46:29 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.split 2019-10-24 23:46:31 [runtime] (split_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS 2019-10-24 23:46:31 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.chnk0.main 2019-10-24 23:46:31 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.chnk1.main 2019-10-24 23:46:32 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.chnk2.main 2019-10-24 23:46:32 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.chnk3.main 2019-10-24 23:46:42 [runtime] (split_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY 2019-10-24 23:46:46 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY.fork0.join 2019-10-24 23:47:11 [runtime] (join_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY 2019-10-24 23:51:24 [runtime] (chunks_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS 2019-10-24 23:51:24 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.join 2019-10-24 23:51:25 [runtime] (join_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS 2019-10-24 23:51:26 [runtime] (ready) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS 2019-10-24 23:51:27 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.split 2019-10-24 23:51:32 [runtime] (split_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS 2019-10-24 23:51:35 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk00.main 2019-10-24 23:51:35 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk01.main 2019-10-24 23:51:37 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk02.main 2019-10-24 23:51:38 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk03.main 2019-10-24 23:51:38 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk04.main 2019-10-24 23:51:38 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk05.main 2019-10-24 23:51:39 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk06.main 2019-10-24 23:51:39 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk07.main 2019-10-24 23:51:39 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk08.main 2019-10-24 23:51:40 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk09.main 2019-10-24 23:51:40 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk10.main 2019-10-24 23:51:40 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk11.main 2019-10-24 23:51:41 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk12.main 2019-10-24 23:51:41 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk13.main 2019-10-24 23:51:41 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk14.main 2019-10-24 23:51:42 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk15.main 2019-10-24 23:51:42 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk16.main 2019-10-24 23:51:43 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk17.main 2019-10-24 23:51:43 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk18.main 2019-10-24 23:51:44 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk19.main 2019-10-24 23:51:44 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk20.main 2019-10-24 23:51:44 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk21.main 2019-10-24 23:51:45 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk22.main 2019-10-24 23:51:45 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk23.main 2019-10-24 23:51:46 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk24.main 2019-10-24 23:51:46 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk25.main 2019-10-24 23:51:46 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk26.main 2019-10-24 23:51:46 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk27.main 2019-10-24 23:56:53 [runtime] (update) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0 chunks running (1/28 completed) 2019-10-24 23:58:50 [runtime] (chunks_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS 2019-10-24 23:58:51 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.join 2019-10-24 23:59:05 [runtime] (join_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS 2019-10-24 23:59:10 [runtime] (ready) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS 2019-10-24 23:59:10 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.split 2019-10-24 23:59:14 [runtime] (split_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS 2019-10-24 23:59:16 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk00.main 2019-10-24 23:59:17 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk01.main 2019-10-24 23:59:17 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk02.main 2019-10-24 23:59:18 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk03.main 2019-10-24 23:59:18 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk04.main 2019-10-24 23:59:19 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk05.main 2019-10-24 23:59:19 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk06.main 2019-10-24 23:59:20 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk07.main 2019-10-24 23:59:20 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk08.main 2019-10-24 23:59:21 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk09.main 2019-10-24 23:59:22 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk10.main 2019-10-24 23:59:25 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk11.main 2019-10-24 23:59:27 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk12.main 2019-10-24 23:59:29 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk13.main 2019-10-24 23:59:31 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk14.main 2019-10-24 23:59:35 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk15.main 2019-10-24 23:59:39 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk16.main 2019-10-24 23:59:41 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk17.main 2019-10-24 23:59:43 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk18.main 2019-10-24 23:59:45 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk19.main 2019-10-24 23:59:46 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk20.main 2019-10-24 23:59:47 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk21.main 2019-10-24 23:59:48 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk22.main 2019-10-24 23:59:48 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk23.main 2019-10-24 23:59:48 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk24.main 2019-10-24 23:59:49 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk25.main 2019-10-24 23:59:49 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk26.main 2019-10-24 23:59:50 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk27.main 2019-10-25 00:00:36 [runtime] (chunks_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS 2019-10-25 00:00:37 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.join 2019-10-25 00:00:42 [runtime] (join_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS 2019-10-25 00:00:43 [runtime] (ready) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS 2019-10-25 00:00:43 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.split 2019-10-25 00:00:46 [runtime] (split_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS 2019-10-25 00:00:49 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk00.main 2019-10-25 00:00:49 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk01.main 2019-10-25 00:00:49 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk02.main 2019-10-25 00:00:50 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk03.main 2019-10-25 00:00:50 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk04.main 2019-10-25 00:00:50 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk05.main 2019-10-25 00:00:51 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk06.main 2019-10-25 00:00:52 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk07.main 2019-10-25 00:00:52 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk08.main 2019-10-25 00:00:52 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk09.main 2019-10-25 00:00:53 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk10.main 2019-10-25 00:00:53 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk11.main 2019-10-25 00:00:53 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk12.main 2019-10-25 00:00:54 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk13.main 2019-10-25 00:00:54 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk14.main 2019-10-25 00:00:54 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk15.main 2019-10-25 00:00:54 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk16.main 2019-10-25 00:00:54 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk17.main 2019-10-25 00:00:55 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk18.main 2019-10-25 00:00:55 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk19.main 2019-10-25 00:00:55 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk20.main 2019-10-25 00:00:55 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk21.main 2019-10-25 00:00:56 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk22.main 2019-10-25 00:00:56 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk23.main 2019-10-25 00:00:56 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk24.main 2019-10-25 00:00:56 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk25.main 2019-10-25 00:00:56 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk26.main 2019-10-25 00:00:57 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.chnk27.main 2019-10-25 00:06:16 [runtime] (update) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0 chunks running (1/28 completed) 2019-10-25 00:11:43 [runtime] (update) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0 chunks running (14/28 completed) 2019-10-25 00:17:18 [runtime] (update) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0 chunks running (21/28 completed) 2019-10-25 00:20:41 [runtime] (chunks_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS 2019-10-25 00:20:41 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.join 2019-10-25 00:20:45 [runtime] (join_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS 2019-10-25 00:20:53 [runtime] (ready) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS 2019-10-25 00:20:53 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.split 2019-10-25 00:20:57 [runtime] (split_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS 2019-10-25 00:21:00 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk00.main 2019-10-25 00:21:00 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk01.main 2019-10-25 00:21:00 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk02.main 2019-10-25 00:21:01 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk03.main 2019-10-25 00:21:01 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk04.main 2019-10-25 00:21:02 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk05.main 2019-10-25 00:21:02 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk06.main 2019-10-25 00:21:02 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk07.main 2019-10-25 00:21:03 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk08.main 2019-10-25 00:21:03 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk09.main 2019-10-25 00:21:03 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk10.main 2019-10-25 00:21:04 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk11.main 2019-10-25 00:21:04 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk12.main 2019-10-25 00:21:05 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk13.main 2019-10-25 00:21:05 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk14.main 2019-10-25 00:21:06 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk15.main 2019-10-25 00:21:06 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk16.main 2019-10-25 00:21:07 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk17.main 2019-10-25 00:21:08 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk18.main 2019-10-25 00:21:09 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk19.main 2019-10-25 00:21:09 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk20.main 2019-10-25 00:21:10 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk21.main 2019-10-25 00:21:13 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk22.main 2019-10-25 00:21:14 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk23.main 2019-10-25 00:21:15 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk24.main 2019-10-25 00:21:15 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk25.main 2019-10-25 00:21:15 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk26.main 2019-10-25 00:21:16 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk27.main 2019-10-25 00:26:17 [runtime] (update) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0 chunks running (13/28 completed) 2019-10-25 00:26:34 [runtime] (chunks_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS 2019-10-25 00:26:34 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.join 2019-10-25 00:30:23 [runtime] (join_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS 2019-10-25 00:30:31 [runtime] (ready) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC 2019-10-25 00:30:32 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.split 2019-10-25 00:30:36 [runtime] (split_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC 2019-10-25 00:30:39 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk00.main 2019-10-25 00:30:39 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk01.main 2019-10-25 00:30:39 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk02.main 2019-10-25 00:30:40 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk03.main 2019-10-25 00:30:40 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk04.main 2019-10-25 00:30:41 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk05.main 2019-10-25 00:30:41 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk06.main 2019-10-25 00:30:43 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk07.main 2019-10-25 00:30:44 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk08.main 2019-10-25 00:30:44 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk09.main 2019-10-25 00:30:44 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk10.main 2019-10-25 00:30:45 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk11.main 2019-10-25 00:30:45 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk12.main 2019-10-25 00:30:46 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk13.main 2019-10-25 00:30:46 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk14.main 2019-10-25 00:30:46 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk15.main 2019-10-25 00:30:47 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk16.main 2019-10-25 00:30:47 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk17.main 2019-10-25 00:30:47 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk18.main 2019-10-25 00:30:48 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk19.main 2019-10-25 00:30:48 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk20.main 2019-10-25 00:30:48 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk21.main 2019-10-25 00:30:48 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk22.main 2019-10-25 00:30:49 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk23.main 2019-10-25 00:30:49 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk24.main 2019-10-25 00:30:49 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk25.main 2019-10-25 00:30:49 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk26.main 2019-10-25 00:30:50 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk27.main 2019-10-25 00:36:15 [runtime] (update) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0 chunks running (14/28 completed) 2019-10-25 00:38:46 [runtime] (chunks_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC 2019-10-25 00:38:47 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.join 2019-10-25 00:38:51 [runtime] (join_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC 2019-10-25 00:38:56 [runtime] (ready) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC 2019-10-25 00:38:56 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.split 2019-10-25 00:38:59 [runtime] (split_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC 2019-10-25 00:39:01 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk00.main 2019-10-25 00:39:01 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk01.main 2019-10-25 00:39:01 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk02.main 2019-10-25 00:39:02 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk03.main 2019-10-25 00:39:02 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk04.main 2019-10-25 00:39:03 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk05.main 2019-10-25 00:39:03 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk06.main 2019-10-25 00:39:04 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk07.main 2019-10-25 00:39:04 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk08.main 2019-10-25 00:39:05 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk09.main 2019-10-25 00:39:05 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk10.main 2019-10-25 00:39:06 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk11.main 2019-10-25 00:39:06 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk12.main 2019-10-25 00:39:06 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk13.main 2019-10-25 00:39:07 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk14.main 2019-10-25 00:39:07 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk15.main 2019-10-25 00:39:07 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk16.main 2019-10-25 00:44:08 [runtime] (update) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0 chunks running (8/17 completed) 2019-10-25 00:47:31 [runtime] (chunks_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC 2019-10-25 00:47:31 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.join 2019-10-25 00:50:49 [runtime] (join_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC 2019-10-25 00:51:01 [runtime] (ready) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES 2019-10-25 00:51:01 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.split 2019-10-25 00:51:22 [runtime] (split_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES 2019-10-25 00:51:26 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk00.main 2019-10-25 00:51:26 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk01.main 2019-10-25 00:51:26 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk02.main 2019-10-25 00:51:27 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk03.main 2019-10-25 00:51:27 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk04.main 2019-10-25 00:51:28 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk05.main 2019-10-25 00:51:28 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk06.main 2019-10-25 00:51:28 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk07.main 2019-10-25 00:51:29 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk08.main 2019-10-25 00:51:29 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk09.main 2019-10-25 00:51:30 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk10.main 2019-10-25 00:51:30 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk11.main 2019-10-25 00:51:30 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk12.main 2019-10-25 00:51:31 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk13.main 2019-10-25 00:51:31 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk14.main 2019-10-25 00:51:32 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk15.main 2019-10-25 00:51:32 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk16.main 2019-10-25 00:51:32 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk17.main 2019-10-25 00:51:33 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk18.main 2019-10-25 00:51:34 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk19.main 2019-10-25 00:51:34 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk20.main 2019-10-25 00:51:35 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk21.main 2019-10-25 00:51:35 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk22.main 2019-10-25 00:51:36 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk23.main 2019-10-25 00:51:36 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk24.main 2019-10-25 00:51:37 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk25.main 2019-10-25 00:51:37 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk26.main 2019-10-25 00:51:37 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk27.main 2019-10-25 00:51:38 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk28.main 2019-10-25 00:51:38 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk29.main 2019-10-25 00:51:38 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk30.main 2019-10-25 00:51:38 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk31.main 2019-10-25 00:51:39 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk32.main 2019-10-25 00:51:39 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk33.main 2019-10-25 00:51:39 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk34.main 2019-10-25 00:51:39 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk35.main 2019-10-25 00:51:40 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk36.main 2019-10-25 00:51:40 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk37.main 2019-10-25 00:51:40 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk38.main 2019-10-25 00:51:40 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk39.main 2019-10-25 00:51:40 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk40.main 2019-10-25 00:51:41 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk41.main 2019-10-25 00:56:25 [runtime] (chunks_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES 2019-10-25 00:56:25 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.join 2019-10-25 00:56:32 [runtime] (join_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES 2019-10-25 00:56:36 [runtime] (ready) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES 2019-10-25 00:56:36 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.split 2019-10-25 00:56:36 [runtime] (ready) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS 2019-10-25 00:56:37 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.split 2019-10-25 00:56:40 [runtime] (split_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS 2019-10-25 00:56:43 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk00.main 2019-10-25 00:56:43 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk01.main 2019-10-25 00:56:44 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk02.main 2019-10-25 00:56:44 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk03.main 2019-10-25 00:56:45 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk04.main 2019-10-25 00:56:45 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk05.main 2019-10-25 00:56:46 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk06.main 2019-10-25 00:56:48 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk07.main 2019-10-25 00:56:48 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk08.main 2019-10-25 00:56:49 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk09.main 2019-10-25 00:56:49 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk10.main 2019-10-25 00:56:49 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk11.main 2019-10-25 00:56:50 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk12.main 2019-10-25 00:56:50 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk13.main 2019-10-25 00:56:51 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk14.main 2019-10-25 00:56:51 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk15.main 2019-10-25 00:56:51 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk16.main 2019-10-25 00:56:52 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk17.main 2019-10-25 00:56:52 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk18.main 2019-10-25 00:56:53 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk19.main 2019-10-25 00:56:53 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk20.main 2019-10-25 00:56:53 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk21.main 2019-10-25 00:56:54 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk22.main 2019-10-25 00:56:54 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk23.main 2019-10-25 00:56:55 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk24.main 2019-10-25 00:56:55 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk25.main 2019-10-25 00:56:56 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk26.main 2019-10-25 00:56:56 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk27.main 2019-10-25 00:56:56 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk28.main 2019-10-25 00:56:57 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk29.main 2019-10-25 00:56:57 [runtime] (run:local) 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ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS 2019-10-25 01:05:16 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.join 2019-10-25 01:06:57 [runtime] (update) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0 chunks running (17/42 completed) 2019-10-25 01:07:39 [runtime] (chunks_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES 2019-10-25 01:07:40 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.join 2019-10-25 01:11:33 [runtime] (update) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 join_running 2019-10-25 01:12:14 [runtime] (join_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES 2019-10-25 01:12:21 [runtime] (ready) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES 2019-10-25 01:12:21 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES.fork0.split 2019-10-25 01:12:26 [runtime] (split_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES 2019-10-25 01:12:26 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES.fork0.join 2019-10-25 01:15:05 [runtime] (join_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES 2019-10-25 01:15:06 [runtime] (ready) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES 2019-10-25 01:15:06 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.split 2019-10-25 01:15:06 [runtime] (ready) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT 2019-10-25 01:15:08 [runtime] (run:local) 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ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk26.main 2019-10-25 01:15:32 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk27.main 2019-10-25 01:15:32 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk28.main 2019-10-25 01:15:33 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk29.main 2019-10-25 01:15:33 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk30.main 2019-10-25 01:15:33 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk31.main 2019-10-25 01:15:34 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk32.main 2019-10-25 01:15:34 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk33.main 2019-10-25 01:15:34 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk34.main 2019-10-25 01:15:35 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk35.main 2019-10-25 01:15:35 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk36.main 2019-10-25 01:15:35 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk37.main 2019-10-25 01:15:35 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk38.main 2019-10-25 01:15:36 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk39.main 2019-10-25 01:15:36 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk40.main 2019-10-25 01:15:36 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk41.main 2019-10-25 01:15:39 [runtime] (chunks_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT 2019-10-25 01:15:40 [runtime] (ready) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX 2019-10-25 01:15:40 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX.fork0.split 2019-10-25 01:16:57 [runtime] (split_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX 2019-10-25 01:16:58 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX.fork0.join 2019-10-25 01:17:11 [runtime] (join_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX 2019-10-25 01:17:12 [runtime] (ready) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_FBPCA 2019-10-25 01:17:12 [runtime] (disabled) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_FBPCA 2019-10-25 01:17:13 [runtime] (ready) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA 2019-10-25 01:17:13 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA.fork0.split 2019-10-25 01:17:13 [runtime] (ready) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS 2019-10-25 01:17:13 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS.fork0.split 2019-10-25 01:17:14 [runtime] (ready) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CORRECT_CHEMISTRY_BATCH 2019-10-25 01:17:14 [runtime] (disabled) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CORRECT_CHEMISTRY_BATCH 2019-10-25 01:17:18 [runtime] (split_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA 2019-10-25 01:17:18 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA.fork0.chnk0.main 2019-10-25 01:17:18 [runtime] (split_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS 2019-10-25 01:17:19 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS.fork0.join 2019-10-25 01:17:23 [runtime] (join_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS 2019-10-25 01:17:32 [runtime] (update) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 join_running 2019-10-25 01:17:35 [runtime] (chunks_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA 2019-10-25 01:17:35 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA.fork0.join 2019-10-25 01:17:42 [runtime] (join_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA 2019-10-25 01:17:43 [runtime] (ready) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT 2019-10-25 01:17:43 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT.fork0.chnk0.main 2019-10-25 01:17:48 [runtime] (chunks_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT 2019-10-25 01:17:52 [runtime] (ready) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING 2019-10-25 01:17:52 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING.fork0.split 2019-10-25 01:17:52 [runtime] (ready) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE 2019-10-25 01:17:53 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE.fork0.split 2019-10-25 01:17:53 [runtime] (ready) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP 2019-10-25 01:17:53 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP.fork0.split 2019-10-25 01:17:54 [runtime] (ready) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS 2019-10-25 01:17:54 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.split 2019-10-25 01:17:59 [runtime] (split_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE 2019-10-25 01:18:00 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE.fork0.chnk0.main 2019-10-25 01:18:00 [runtime] (split_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING 2019-10-25 01:18:00 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING.fork0.chnk0.main 2019-10-25 01:18:00 [runtime] (split_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS 2019-10-25 01:18:02 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk0.main 2019-10-25 01:18:04 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk1.main 2019-10-25 01:18:05 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk2.main 2019-10-25 01:18:07 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk3.main 2019-10-25 01:18:08 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk4.main 2019-10-25 01:18:09 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk5.main 2019-10-25 01:18:10 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk6.main 2019-10-25 01:18:10 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk7.main 2019-10-25 01:18:11 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk8.main 2019-10-25 01:18:18 [runtime] (split_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP 2019-10-25 01:18:18 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP.fork0.chnk0.main 2019-10-25 01:18:26 [runtime] (chunks_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES 2019-10-25 01:18:27 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.join 2019-10-25 01:18:27 [runtime] (chunks_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING 2019-10-25 01:18:27 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING.fork0.join 2019-10-25 01:18:29 [runtime] (chunks_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS 2019-10-25 01:18:29 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.join 2019-10-25 01:18:36 [runtime] (chunks_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE 2019-10-25 01:18:37 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE.fork0.join 2019-10-25 01:18:37 [runtime] (join_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS 2019-10-25 01:18:42 [runtime] (join_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE 2019-10-25 01:18:44 [runtime] (join_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING 2019-10-25 01:18:45 [runtime] (ready) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS 2019-10-25 01:18:45 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS.fork0.split 2019-10-25 01:18:51 [runtime] (split_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS 2019-10-25 01:18:51 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS.fork0.chnk0.main 2019-10-25 01:18:56 [runtime] (chunks_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS 2019-10-25 01:18:57 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS.fork0.join 2019-10-25 01:19:09 [runtime] (chunks_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP 2019-10-25 01:19:10 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP.fork0.join 2019-10-25 01:19:13 [runtime] (join_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS 2019-10-25 01:19:13 [runtime] (ready) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.COMBINE_CLUSTERING 2019-10-25 01:19:14 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.COMBINE_CLUSTERING.fork0.chnk0.main 2019-10-25 01:19:17 [runtime] (join_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP 2019-10-25 01:19:21 [runtime] (chunks_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.COMBINE_CLUSTERING 2019-10-25 01:19:23 [runtime] (ready) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION 2019-10-25 01:19:23 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.split 2019-10-25 01:19:28 [runtime] (split_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION 2019-10-25 01:19:29 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk00.main 2019-10-25 01:19:29 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk01.main 2019-10-25 01:19:30 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk02.main 2019-10-25 01:19:31 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk03.main 2019-10-25 01:19:31 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk04.main 2019-10-25 01:19:32 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk05.main 2019-10-25 01:19:32 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk06.main 2019-10-25 01:19:33 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk07.main 2019-10-25 01:19:33 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk08.main 2019-10-25 01:19:34 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk09.main 2019-10-25 01:20:12 [runtime] (join_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES 2019-10-25 01:20:15 [runtime] (ready) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS 2019-10-25 01:20:15 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS.fork0.split 2019-10-25 01:20:41 [runtime] (split_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS 2019-10-25 01:20:42 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS.fork0.chnk0.main 2019-10-25 01:21:39 [runtime] (chunks_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION 2019-10-25 01:21:40 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.join 2019-10-25 01:21:51 [runtime] (join_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION 2019-10-25 01:21:54 [runtime] (ready) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS 2019-10-25 01:21:54 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS.fork0.split 2019-10-25 01:21:58 [runtime] (split_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS 2019-10-25 01:21:58 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS.fork0.chnk0.main 2019-10-25 01:22:13 [runtime] (chunks_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS 2019-10-25 01:22:13 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS.fork0.join 2019-10-25 01:22:27 [runtime] (join_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS 2019-10-25 01:23:32 [runtime] (update) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 join_running 2019-10-25 01:24:24 [runtime] (chunks_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS 2019-10-25 01:24:25 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS.fork0.join 2019-10-25 01:24:30 [runtime] (join_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS 2019-10-25 01:24:31 [runtime] (ready) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS 2019-10-25 01:24:31 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS.fork0.split 2019-10-25 01:24:35 [runtime] (split_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS 2019-10-25 01:24:35 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS.fork0.chnk0.main 2019-10-25 01:24:39 [runtime] (chunks_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS 2019-10-25 01:24:40 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS.fork0.join 2019-10-25 01:24:44 [runtime] (join_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS 2019-10-25 01:24:48 [runtime] (ready) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.CALL_PROTOSPACERS 2019-10-25 01:24:48 [runtime] (disabled) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.CALL_PROTOSPACERS 2019-10-25 01:24:49 [runtime] (ready) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET 2019-10-25 01:24:49 [runtime] (disabled) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET 2019-10-25 01:24:49 [runtime] (ready) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE 2019-10-25 01:24:49 [runtime] (disabled) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE 2019-10-25 01:24:50 [runtime] (ready) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS 2019-10-25 01:24:50 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS.fork0.chnk0.main 2019-10-25 01:24:52 [runtime] (ready) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS 2019-10-25 01:24:52 [runtime] (disabled) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS 2019-10-25 01:24:53 [runtime] (disabled) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER 2019-10-25 01:25:01 [runtime] (chunks_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS 2019-10-25 01:25:04 [runtime] (ready) ID.Nash1.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS 2019-10-25 01:25:04 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS.fork0.split 2019-10-25 01:25:09 [runtime] (split_complete) ID.Nash1.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS 2019-10-25 01:25:09 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS.fork0.chnk0.main 2019-10-25 01:25:35 [runtime] (chunks_complete) ID.Nash1.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS 2019-10-25 01:25:35 [runtime] (run:local) ID.Nash1.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS.fork0.join 2019-10-25 01:25:41 [runtime] (join_complete) ID.Nash1.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS 2019-10-25 01:29:34 [runtime] (update) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 join_running 2019-10-25 01:32:10 [runtime] (join_complete) ID.Nash1.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS Outputs: - Run summary HTML: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH1/Nash1/outs/web_summary.html - Run summary CSV: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH1/Nash1/outs/metrics_summary.csv - BAM: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH1/Nash1/outs/possorted_genome_bam.bam - BAM index: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH1/Nash1/outs/possorted_genome_bam.bam.bai - Filtered feature-barcode matrices MEX: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH1/Nash1/outs/filtered_feature_bc_matrix - Filtered feature-barcode matrices HDF5: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH1/Nash1/outs/filtered_feature_bc_matrix.h5 - Unfiltered feature-barcode matrices MEX: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH1/Nash1/outs/raw_feature_bc_matrix - Unfiltered feature-barcode matrices HDF5: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH1/Nash1/outs/raw_feature_bc_matrix.h5 - Secondary analysis output CSV: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH1/Nash1/outs/analysis - Per-molecule read information: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH1/Nash1/outs/molecule_info.h5 - CRISPR-specific analysis: null - Loupe Cell Browser file: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/NASH1/Nash1/outs/cloupe.cloupe - Feature Reference: null Waiting 6 seconds for UI to do final refresh. Pipestance completed successfully! 2019-10-25 01:32:31 Shutting down. Saving pipestance info to "Nash1/Nash1.mri.tgz" Finished .............. Fri Oct 25 01:33:14 EDT 2019