========================================================== Starting on : Wed Oct 16 08:03:48 EDT 2019 Running on node : scc-wk3 Current job ID : 49087 Current job name : Chow_3 Task index number : ========================================================== /share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/bin cellranger count (3.1.0) Copyright (c) 2019 10x Genomics, Inc. All rights reserved. ------------------------------------------------------------------------------- Martian Runtime - '3.1.0-v3.2.3' Serving UI at http://scc-wk3:37533?auth=52wQnwERKD39uPOwA0fR_9C9b2XGNce6BDkHp50bB0w Running preflight checks (please wait)... 2019-10-16 08:03:51 [runtime] (ready) ID.Chow_3_run.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF 2019-10-16 08:03:52 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF.fork0.chnk0.main 2019-10-16 08:03:57 [runtime] (chunks_complete) ID.Chow_3_run.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF Checking sample info... Checking FASTQ folder... Checking libraries... Checking reference... Checking reference_path (/restricted/projectnb/waxmanlab/kkarri/tabula_muris/drop-seq/mm10_ref/updated-usethis-mm10plus-pcg-ercc-lnc-nodups) on scc-wk3... Checking chemistry... Checking optional arguments... mrc: '3.1.0-v3.2.3' mrp: '3.1.0-v3.2.3' Anaconda: Python 2.7.14 :: Anaconda, Inc. numpy: 1.14.2 scipy: 1.0.1 pysam: 0.14.1 h5py: 2.8.0 pandas: 0.22.0 STAR: STAR_2.5.1b samtools: samtools 1.7 Using htslib 1.7 Copyright (C) 2018 Genome Research Ltd. 2019-10-16 08:04:08 [runtime] (ready) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.DISABLE_FEATURE_STAGES 2019-10-16 08:04:09 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.DISABLE_FEATURE_STAGES.fork0.chnk0.main 2019-10-16 08:04:09 [runtime] (ready) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY 2019-10-16 08:04:10 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0.main 2019-10-16 08:04:10 [runtime] (ready) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION 2019-10-16 08:04:11 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION.fork0.chnk0.main 2019-10-16 08:04:12 [runtime] (chunks_complete) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.DISABLE_FEATURE_STAGES 2019-10-16 08:04:13 [runtime] (progress) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0: Indexing genome... 2019-10-16 08:04:14 [runtime] (progress) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0: Indexing genome... 2019-10-16 08:04:14 [runtime] (chunks_complete) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION 2019-10-16 08:04:37 [runtime] (progress) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0: Building transcriptome... 2019-10-16 08:04:44 [runtime] (progress) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0: Building kmer index... 2019-10-16 08:05:55 [runtime] (progress) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0: Mapping reads... 2019-10-16 08:06:12 [runtime] (chunks_complete) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY 2019-10-16 08:06:16 [runtime] (ready) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS 2019-10-16 08:06:17 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS.fork0.chnk0.main 2019-10-16 08:06:23 [runtime] (chunks_complete) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS 2019-10-16 08:06:24 [runtime] (ready) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY 2019-10-16 08:06:25 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY.fork0.split 2019-10-16 08:06:25 [runtime] (ready) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS 2019-10-16 08:06:26 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.split 2019-10-16 08:06:28 [runtime] (split_complete) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS 2019-10-16 08:06:30 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.chnk00.main 2019-10-16 08:06:31 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.chnk01.main 2019-10-16 08:06:31 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.chnk02.main 2019-10-16 08:06:32 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.chnk03.main 2019-10-16 08:06:33 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.chnk04.main 2019-10-16 08:06:34 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.chnk05.main 2019-10-16 08:06:40 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.chnk06.main 2019-10-16 08:06:45 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.chnk07.main 2019-10-16 08:06:48 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.chnk08.main 2019-10-16 08:06:55 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.chnk09.main 2019-10-16 08:06:58 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.chnk10.main 2019-10-16 08:07:02 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.chnk11.main 2019-10-16 08:07:24 [runtime] (split_complete) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY 2019-10-16 08:07:32 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY.fork0.join 2019-10-16 08:12:35 [runtime] (update) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0 chunks running (3/12 completed) 2019-10-16 08:17:46 [runtime] (update) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0 chunks running (3/12 completed) 2019-10-16 08:19:36 [runtime] (update) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY.fork0 join_running 2019-10-16 08:19:48 [runtime] (join_complete) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY 2019-10-16 08:21:29 [runtime] (chunks_complete) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS 2019-10-16 08:21:30 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.join 2019-10-16 08:21:32 [runtime] (join_complete) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS 2019-10-16 08:21:34 [runtime] (ready) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS 2019-10-16 08:21:34 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.split 2019-10-16 08:21:40 [runtime] (split_complete) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS 2019-10-16 08:21:47 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk00.main 2019-10-16 08:21:47 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk01.main 2019-10-16 08:21:48 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk02.main 2019-10-16 08:21:48 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk03.main 2019-10-16 08:21:49 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk04.main 2019-10-16 08:21:49 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk05.main 2019-10-16 08:21:50 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk06.main 2019-10-16 08:21:50 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk07.main 2019-10-16 08:21:51 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk08.main 2019-10-16 08:21:51 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk09.main 2019-10-16 08:21:52 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk10.main 2019-10-16 08:21:52 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk11.main 2019-10-16 08:21:53 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk12.main 2019-10-16 08:21:53 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk13.main 2019-10-16 08:21:54 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk14.main 2019-10-16 08:21:54 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk15.main 2019-10-16 08:21:55 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk16.main 2019-10-16 08:21:55 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk17.main 2019-10-16 08:21:55 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk18.main 2019-10-16 08:21:56 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk19.main 2019-10-16 08:21:57 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk20.main 2019-10-16 08:21:57 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk21.main 2019-10-16 08:21:57 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk22.main 2019-10-16 08:21:59 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk23.main 2019-10-16 08:21:59 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk24.main 2019-10-16 08:22:00 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk25.main 2019-10-16 08:22:00 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk26.main 2019-10-16 08:22:00 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk27.main 2019-10-16 08:22:01 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk28.main 2019-10-16 08:22:01 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk29.main 2019-10-16 08:22:01 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk30.main 2019-10-16 08:22:02 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk31.main 2019-10-16 08:22:02 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk32.main 2019-10-16 08:22:02 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk33.main 2019-10-16 08:22:02 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk34.main 2019-10-16 08:22:03 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk35.main 2019-10-16 08:22:03 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk36.main 2019-10-16 08:22:03 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk37.main 2019-10-16 08:22:04 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk38.main 2019-10-16 08:22:05 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk39.main 2019-10-16 08:22:05 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk40.main 2019-10-16 08:22:06 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk41.main 2019-10-16 08:22:06 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk42.main 2019-10-16 08:22:07 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk43.main 2019-10-16 08:22:07 [runtime] (run:local) 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ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk82.main 2019-10-16 08:50:42 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk83.main 2019-10-16 08:53:48 [runtime] (chunks_complete) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS 2019-10-16 08:53:49 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.join 2019-10-16 08:53:55 [runtime] (join_complete) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS 2019-10-16 08:53:56 [runtime] (ready) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS 2019-10-16 08:53:56 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.split 2019-10-16 08:53:59 [runtime] (split_complete) 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ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk77.main 2019-10-16 10:10:24 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk78.main 2019-10-16 10:10:25 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk79.main 2019-10-16 10:10:25 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk80.main 2019-10-16 10:10:25 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk81.main 2019-10-16 10:10:26 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk82.main 2019-10-16 10:10:26 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk83.main 2019-10-16 10:15:27 [runtime] (update) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0 chunks running (29/84 completed) 2019-10-16 10:20:37 [runtime] (update) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0 chunks running (44/84 completed) 2019-10-16 10:25:15 [runtime] (chunks_complete) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS 2019-10-16 10:25:16 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.join 2019-10-16 10:31:21 [runtime] (update) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0 join_running 2019-10-16 10:37:23 [runtime] (update) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0 join_running 2019-10-16 10:43:23 [runtime] (update) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0 join_running 2019-10-16 10:49:23 [runtime] (update) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0 join_running 2019-10-16 10:55:25 [runtime] (update) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0 join_running 2019-10-16 10:59:28 [runtime] (join_complete) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS 2019-10-16 10:59:59 [runtime] (ready) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC 2019-10-16 10:59:59 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.split 2019-10-16 11:00:07 [runtime] (split_complete) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC 2019-10-16 11:00:15 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk00.main 2019-10-16 11:00:15 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk01.main 2019-10-16 11:00:16 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk02.main 2019-10-16 11:00:16 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk03.main 2019-10-16 11:00:17 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk04.main 2019-10-16 11:00:18 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk05.main 2019-10-16 11:00:18 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk06.main 2019-10-16 11:00:19 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk07.main 2019-10-16 11:00:20 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk08.main 2019-10-16 11:00:20 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk09.main 2019-10-16 11:00:21 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk10.main 2019-10-16 11:00:21 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk11.main 2019-10-16 11:00:22 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk12.main 2019-10-16 11:00:22 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk13.main 2019-10-16 11:00:23 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk14.main 2019-10-16 11:00:25 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk15.main 2019-10-16 11:00:26 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk16.main 2019-10-16 11:00:26 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk17.main 2019-10-16 11:00:27 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk18.main 2019-10-16 11:00:27 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk19.main 2019-10-16 11:00:27 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk20.main 2019-10-16 11:00:27 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk21.main 2019-10-16 11:00:28 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk22.main 2019-10-16 11:00:28 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk23.main 2019-10-16 11:00:29 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk24.main 2019-10-16 11:00:29 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk25.main 2019-10-16 11:00:29 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk26.main 2019-10-16 11:00:30 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk27.main 2019-10-16 11:00:30 [runtime] (run:local) 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ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk35.main 2019-10-16 11:00:33 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk36.main 2019-10-16 11:00:33 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk37.main 2019-10-16 11:00:34 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk38.main 2019-10-16 11:00:34 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk39.main 2019-10-16 11:00:34 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk40.main 2019-10-16 11:00:35 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk41.main 2019-10-16 11:00:35 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk42.main 2019-10-16 11:00:36 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk43.main 2019-10-16 11:00:36 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk44.main 2019-10-16 11:00:36 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk45.main 2019-10-16 11:00:36 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk46.main 2019-10-16 11:00:36 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk47.main 2019-10-16 11:00:37 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk48.main 2019-10-16 11:00:37 [runtime] (run:local) 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2019-10-16 11:22:41 [runtime] (ready) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC 2019-10-16 11:22:42 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.split 2019-10-16 11:22:45 [runtime] (split_complete) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC 2019-10-16 11:22:47 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk00.main 2019-10-16 11:22:47 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk01.main 2019-10-16 11:22:48 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk02.main 2019-10-16 11:22:48 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk03.main 2019-10-16 11:22:49 [runtime] (run:local) 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2019-10-16 11:51:30 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk20.main 2019-10-16 11:51:31 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk21.main 2019-10-16 11:51:32 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk22.main 2019-10-16 11:51:33 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk23.main 2019-10-16 11:51:34 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk24.main 2019-10-16 11:51:34 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk25.main 2019-10-16 11:51:35 [runtime] (run:local) 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2019-10-16 11:51:39 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk40.main 2019-10-16 11:51:40 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk41.main 2019-10-16 11:51:40 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk42.main 2019-10-16 11:51:40 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk43.main 2019-10-16 11:51:41 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk44.main 2019-10-16 11:51:41 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk45.main 2019-10-16 11:51:41 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk46.main 2019-10-16 11:51:41 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk47.main 2019-10-16 11:51:41 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk48.main 2019-10-16 11:51:42 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk49.main 2019-10-16 11:51:42 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk50.main 2019-10-16 11:51:42 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk51.main 2019-10-16 11:51:43 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk52.main 2019-10-16 11:51:45 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ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk66.main 2019-10-16 11:52:28 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk67.main 2019-10-16 11:57:47 [runtime] (update) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0 chunks running (29/68 completed) 2019-10-16 12:02:51 [runtime] (update) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0 chunks running (65/68 completed) 2019-10-16 12:03:13 [runtime] (chunks_complete) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES 2019-10-16 12:03:14 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.join 2019-10-16 12:03:40 [runtime] (join_complete) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES 2019-10-16 12:03:45 [runtime] (ready) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES 2019-10-16 12:03:46 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.split 2019-10-16 12:03:46 [runtime] (ready) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS 2019-10-16 12:03:46 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.split 2019-10-16 12:03:50 [runtime] (split_complete) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS 2019-10-16 12:03:56 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk00.main 2019-10-16 12:03:56 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk01.main 2019-10-16 12:03:56 [runtime] (run:local) 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ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk09.main 2019-10-16 12:03:59 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk10.main 2019-10-16 12:04:00 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk11.main 2019-10-16 12:04:00 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk12.main 2019-10-16 12:04:01 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk13.main 2019-10-16 12:04:01 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk14.main 2019-10-16 12:04:02 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk15.main 2019-10-16 12:04:02 [runtime] (run:local) 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ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk23.main 2019-10-16 12:04:08 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk24.main 2019-10-16 12:04:08 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk25.main 2019-10-16 12:04:10 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk26.main 2019-10-16 12:04:12 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk27.main 2019-10-16 12:04:17 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk28.main 2019-10-16 12:04:26 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk29.main 2019-10-16 12:04:33 [runtime] (run:local) 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ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk66.main 2019-10-16 12:18:15 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk67.main 2019-10-16 12:19:01 [runtime] (update) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 chunks running (31/68 completed) 2019-10-16 12:23:36 [runtime] (update) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0 chunks running (2/68 completed) 2019-10-16 12:23:36 [runtime] (chunks_complete) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS 2019-10-16 12:23:38 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.join 2019-10-16 12:28:46 [runtime] (update) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0 chunks running (20/68 completed) 2019-10-16 12:29:04 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ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0 join_running 2019-10-16 12:47:54 [runtime] (update) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 join_running 2019-10-16 12:52:06 [runtime] (update) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0 join_running 2019-10-16 12:53:57 [runtime] (update) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 join_running 2019-10-16 12:56:06 [runtime] (join_complete) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES 2019-10-16 12:56:20 [runtime] (ready) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES 2019-10-16 12:56:20 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES.fork0.split 2019-10-16 12:56:28 [runtime] (split_complete) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES 2019-10-16 12:56:29 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES.fork0.join 2019-10-16 12:59:56 [runtime] (update) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 join_running 2019-10-16 13:01:45 [runtime] (join_complete) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES 2019-10-16 13:01:46 [runtime] (ready) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES 2019-10-16 13:01:46 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.split 2019-10-16 13:01:46 [runtime] (ready) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT 2019-10-16 13:01:48 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT.fork0.chnk0.main 2019-10-16 13:01:51 [runtime] (split_complete) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES 2019-10-16 13:02:03 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk00.main 2019-10-16 13:02:03 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk01.main 2019-10-16 13:02:04 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk02.main 2019-10-16 13:02:05 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk03.main 2019-10-16 13:02:06 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk04.main 2019-10-16 13:02:06 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk05.main 2019-10-16 13:02:07 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk06.main 2019-10-16 13:02:08 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk07.main 2019-10-16 13:02:09 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk08.main 2019-10-16 13:02:09 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk09.main 2019-10-16 13:02:10 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk10.main 2019-10-16 13:02:11 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk11.main 2019-10-16 13:02:12 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk12.main 2019-10-16 13:02:13 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk13.main 2019-10-16 13:02:13 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk14.main 2019-10-16 13:02:15 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk15.main 2019-10-16 13:02:16 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk16.main 2019-10-16 13:02:17 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk17.main 2019-10-16 13:02:17 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk18.main 2019-10-16 13:02:18 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk19.main 2019-10-16 13:02:19 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk20.main 2019-10-16 13:02:21 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk21.main 2019-10-16 13:02:22 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk22.main 2019-10-16 13:02:24 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk23.main 2019-10-16 13:02:24 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk24.main 2019-10-16 13:02:25 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk25.main 2019-10-16 13:02:25 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk26.main 2019-10-16 13:02:26 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk27.main 2019-10-16 13:02:27 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk28.main 2019-10-16 13:02:27 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk29.main 2019-10-16 13:02:27 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk30.main 2019-10-16 13:02:28 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk31.main 2019-10-16 13:02:28 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk32.main 2019-10-16 13:02:29 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk33.main 2019-10-16 13:02:30 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk34.main 2019-10-16 13:02:30 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk35.main 2019-10-16 13:02:31 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk36.main 2019-10-16 13:02:31 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk37.main 2019-10-16 13:02:32 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk38.main 2019-10-16 13:02:32 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk39.main 2019-10-16 13:02:33 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk40.main 2019-10-16 13:02:33 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk41.main 2019-10-16 13:02:34 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk42.main 2019-10-16 13:02:34 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk43.main 2019-10-16 13:02:35 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk44.main 2019-10-16 13:02:35 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk45.main 2019-10-16 13:02:36 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk46.main 2019-10-16 13:02:36 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk47.main 2019-10-16 13:02:36 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk48.main 2019-10-16 13:02:37 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk49.main 2019-10-16 13:02:37 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk50.main 2019-10-16 13:02:38 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk51.main 2019-10-16 13:02:38 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk52.main 2019-10-16 13:02:39 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk53.main 2019-10-16 13:02:39 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk54.main 2019-10-16 13:02:40 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk55.main 2019-10-16 13:02:40 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk56.main 2019-10-16 13:02:41 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk57.main 2019-10-16 13:02:41 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk58.main 2019-10-16 13:02:42 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk59.main 2019-10-16 13:02:42 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk60.main 2019-10-16 13:02:42 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk61.main 2019-10-16 13:02:43 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk62.main 2019-10-16 13:02:43 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk63.main 2019-10-16 13:02:45 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk64.main 2019-10-16 13:02:45 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk65.main 2019-10-16 13:02:46 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk66.main 2019-10-16 13:02:46 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk67.main 2019-10-16 13:02:49 [runtime] (chunks_complete) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT 2019-10-16 13:02:51 [runtime] (ready) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX 2019-10-16 13:02:51 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX.fork0.split 2019-10-16 13:05:56 [runtime] (update) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 join_running 2019-10-16 13:07:47 [runtime] (update) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0 chunks running (44/68 completed) 2019-10-16 13:09:28 [runtime] (update) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX.fork0 split_running 2019-10-16 13:09:29 [runtime] (split_complete) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX 2019-10-16 13:09:30 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX.fork0.join 2019-10-16 13:09:47 [runtime] (join_complete) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX 2019-10-16 13:09:49 [runtime] (ready) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA 2019-10-16 13:09:49 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA.fork0.split 2019-10-16 13:09:52 [runtime] (ready) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS 2019-10-16 13:09:52 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS.fork0.split 2019-10-16 13:09:52 [runtime] (ready) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_FBPCA 2019-10-16 13:09:53 [runtime] (disabled) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_FBPCA 2019-10-16 13:09:55 [runtime] (ready) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CORRECT_CHEMISTRY_BATCH 2019-10-16 13:09:55 [runtime] (disabled) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CORRECT_CHEMISTRY_BATCH 2019-10-16 13:09:55 [runtime] (split_complete) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA 2019-10-16 13:09:56 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA.fork0.chnk0.main 2019-10-16 13:09:57 [runtime] (split_complete) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS 2019-10-16 13:09:58 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS.fork0.join 2019-10-16 13:10:03 [runtime] (join_complete) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS 2019-10-16 13:10:20 [runtime] (chunks_complete) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA 2019-10-16 13:10:20 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA.fork0.join 2019-10-16 13:10:26 [runtime] (join_complete) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA 2019-10-16 13:10:27 [runtime] (ready) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT 2019-10-16 13:10:29 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT.fork0.chnk0.main 2019-10-16 13:10:33 [runtime] (chunks_complete) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT 2019-10-16 13:10:36 [runtime] (ready) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING 2019-10-16 13:10:37 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING.fork0.split 2019-10-16 13:10:37 [runtime] (ready) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP 2019-10-16 13:10:37 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP.fork0.split 2019-10-16 13:10:39 [runtime] (ready) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS 2019-10-16 13:10:39 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.split 2019-10-16 13:10:40 [runtime] (ready) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE 2019-10-16 13:10:40 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE.fork0.split 2019-10-16 13:10:42 [runtime] (split_complete) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING 2019-10-16 13:10:42 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING.fork0.chnk0.main 2019-10-16 13:10:44 [runtime] (split_complete) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP 2019-10-16 13:10:46 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP.fork0.chnk0.main 2019-10-16 13:10:47 [runtime] (split_complete) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS 2019-10-16 13:10:50 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk0.main 2019-10-16 13:10:50 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk1.main 2019-10-16 13:10:51 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk2.main 2019-10-16 13:10:52 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk3.main 2019-10-16 13:10:52 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk4.main 2019-10-16 13:10:54 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk5.main 2019-10-16 13:10:54 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk6.main 2019-10-16 13:10:55 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk7.main 2019-10-16 13:10:55 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk8.main 2019-10-16 13:10:56 [runtime] (split_complete) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE 2019-10-16 13:10:57 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE.fork0.chnk0.main 2019-10-16 13:11:04 [runtime] (chunks_complete) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING 2019-10-16 13:11:04 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING.fork0.join 2019-10-16 13:11:06 [runtime] (chunks_complete) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES 2019-10-16 13:11:08 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.join 2019-10-16 13:11:08 [runtime] (chunks_complete) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS 2019-10-16 13:11:09 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.join 2019-10-16 13:11:17 [runtime] (join_complete) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS 2019-10-16 13:11:19 [runtime] (join_complete) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING 2019-10-16 13:11:21 [runtime] (ready) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS 2019-10-16 13:11:21 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS.fork0.split 2019-10-16 13:11:23 [runtime] (chunks_complete) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP 2019-10-16 13:11:24 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP.fork0.join 2019-10-16 13:11:26 [runtime] (split_complete) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS 2019-10-16 13:11:26 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS.fork0.chnk0.main 2019-10-16 13:11:28 [runtime] (chunks_complete) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE 2019-10-16 13:11:29 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE.fork0.join 2019-10-16 13:11:31 [runtime] (join_complete) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP 2019-10-16 13:11:31 [runtime] (chunks_complete) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS 2019-10-16 13:11:32 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS.fork0.join 2019-10-16 13:11:40 [runtime] (join_complete) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE 2019-10-16 13:11:59 [runtime] (update) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 join_running 2019-10-16 13:11:59 [runtime] (join_complete) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS 2019-10-16 13:12:00 [runtime] (ready) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.COMBINE_CLUSTERING 2019-10-16 13:12:01 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.COMBINE_CLUSTERING.fork0.chnk0.main 2019-10-16 13:12:08 [runtime] (chunks_complete) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.COMBINE_CLUSTERING 2019-10-16 13:12:11 [runtime] (ready) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION 2019-10-16 13:12:11 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.split 2019-10-16 13:12:17 [runtime] (split_complete) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION 2019-10-16 13:12:19 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk00.main 2019-10-16 13:12:19 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk01.main 2019-10-16 13:12:20 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk02.main 2019-10-16 13:12:20 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk03.main 2019-10-16 13:12:21 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk04.main 2019-10-16 13:12:21 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk05.main 2019-10-16 13:12:22 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk06.main 2019-10-16 13:12:22 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk07.main 2019-10-16 13:12:23 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk08.main 2019-10-16 13:12:24 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk09.main 2019-10-16 13:14:13 [runtime] (join_complete) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES 2019-10-16 13:14:22 [runtime] (ready) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS 2019-10-16 13:14:22 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS.fork0.split 2019-10-16 13:14:28 [runtime] (split_complete) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS 2019-10-16 13:14:29 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS.fork0.chnk0.main 2019-10-16 13:14:30 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS.fork0.chnk1.main 2019-10-16 13:15:18 [runtime] (chunks_complete) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION 2019-10-16 13:15:18 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.join 2019-10-16 13:15:33 [runtime] (join_complete) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION 2019-10-16 13:15:37 [runtime] (ready) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS 2019-10-16 13:15:37 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS.fork0.split 2019-10-16 13:15:40 [runtime] (split_complete) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS 2019-10-16 13:15:41 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS.fork0.chnk0.main 2019-10-16 13:15:59 [runtime] (chunks_complete) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS 2019-10-16 13:16:00 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS.fork0.join 2019-10-16 13:16:18 [runtime] (join_complete) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS 2019-10-16 13:18:00 [runtime] (update) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 join_running 2019-10-16 13:20:35 [runtime] (update) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS.fork0 chunks running (1/2 completed) 2019-10-16 13:21:56 [runtime] (chunks_complete) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS 2019-10-16 13:21:56 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS.fork0.join 2019-10-16 13:22:02 [runtime] (join_complete) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS 2019-10-16 13:22:04 [runtime] (ready) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS 2019-10-16 13:22:04 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS.fork0.split 2019-10-16 13:22:08 [runtime] (split_complete) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS 2019-10-16 13:22:08 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS.fork0.chnk0.main 2019-10-16 13:22:14 [runtime] (chunks_complete) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS 2019-10-16 13:22:14 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS.fork0.join 2019-10-16 13:22:19 [runtime] (join_complete) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS 2019-10-16 13:22:26 [runtime] (ready) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.CALL_PROTOSPACERS 2019-10-16 13:22:27 [runtime] (disabled) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.CALL_PROTOSPACERS 2019-10-16 13:22:28 [runtime] (ready) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE 2019-10-16 13:22:28 [runtime] (disabled) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE 2019-10-16 13:22:28 [runtime] (ready) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS 2019-10-16 13:22:29 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS.fork0.chnk0.main 2019-10-16 13:22:30 [runtime] (ready) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET 2019-10-16 13:22:30 [runtime] (disabled) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET 2019-10-16 13:22:30 [runtime] (ready) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS 2019-10-16 13:22:31 [runtime] (disabled) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS 2019-10-16 13:22:31 [runtime] (disabled) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER 2019-10-16 13:22:52 [runtime] (chunks_complete) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS 2019-10-16 13:22:57 [runtime] (ready) ID.Chow_3_run.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS 2019-10-16 13:22:57 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS.fork0.split 2019-10-16 13:23:03 [runtime] (split_complete) ID.Chow_3_run.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS 2019-10-16 13:23:03 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS.fork0.chnk0.main 2019-10-16 13:23:35 [runtime] (chunks_complete) ID.Chow_3_run.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS 2019-10-16 13:23:35 [runtime] (run:local) ID.Chow_3_run.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS.fork0.join 2019-10-16 13:23:41 [runtime] (join_complete) ID.Chow_3_run.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS 2019-10-16 13:23:58 [runtime] (update) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 join_running 2019-10-16 13:30:03 [runtime] (update) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 join_running 2019-10-16 13:33:59 [runtime] (join_complete) ID.Chow_3_run.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS Outputs: - Run summary HTML: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/Chow3/Chow_3_run/outs/web_summary.html - Run summary CSV: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/Chow3/Chow_3_run/outs/metrics_summary.csv - BAM: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/Chow3/Chow_3_run/outs/possorted_genome_bam.bam - BAM index: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/Chow3/Chow_3_run/outs/possorted_genome_bam.bam.bai - Filtered feature-barcode matrices MEX: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/Chow3/Chow_3_run/outs/filtered_feature_bc_matrix - Filtered feature-barcode matrices HDF5: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/Chow3/Chow_3_run/outs/filtered_feature_bc_matrix.h5 - Unfiltered feature-barcode matrices MEX: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/Chow3/Chow_3_run/outs/raw_feature_bc_matrix - Unfiltered feature-barcode matrices HDF5: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/Chow3/Chow_3_run/outs/raw_feature_bc_matrix.h5 - Secondary analysis output CSV: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/Chow3/Chow_3_run/outs/analysis - Per-molecule read information: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/Chow3/Chow_3_run/outs/molecule_info.h5 - CRISPR-specific analysis: null - Loupe Cell Browser file: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/Chow3/Chow_3_run/outs/cloupe.cloupe - Feature Reference: null Waiting 6 seconds for UI to do final refresh. Pipestance completed successfully! 2019-10-16 13:34:20 Shutting down. Saving pipestance info to "Chow_3_run/Chow_3_run.mri.tgz" Finished .............. Wed Oct 16 13:35:40 EDT 2019