Martian Runtime - '3.1.0-v3.2.3'
2019-10-16 07:58:28 [build  ] Built with Go version go1.12.5
2019-10-16 07:58:28 [cmdline] mrp __Chow_1_Test.mro Chow_1_Test
2019-10-16 07:58:28 [pid    ] 101386
2019-10-16 07:58:28 [environ] HOSTNAME=scc-wj2.scc.bu.edu
2019-10-16 07:58:28 [environ] SGE_TASK_STEPSIZE=undefined
2019-10-16 07:58:28 [environ] SHELL=/bin/bash
2019-10-16 07:58:28 [environ] NHOSTS=1
2019-10-16 07:58:28 [environ] SGE_O_WORKDIR=/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/Chow1
2019-10-16 07:58:28 [environ] TMPDIR=/scratch/49084.1.mem512
2019-10-16 07:58:28 [environ] SGE_O_HOME=/usr4/spclpgm/kkarri
2019-10-16 07:58:28 [environ] SGE_ARCH=linux-x64
2019-10-16 07:58:28 [environ] SGE_CELL=default
2019-10-16 07:58:28 [environ] LC_ALL=C
2019-10-16 07:58:28 [environ] PYTHONUSERBASE=/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/lib
2019-10-16 07:58:28 [environ] USER=kkarri
2019-10-16 07:58:28 [environ] LD_LIBRARY_PATH=
2019-10-16 07:58:28 [environ] SGE_TASK_LAST=undefined
2019-10-16 07:58:28 [environ] TENX_SUBCMD=count
2019-10-16 07:58:28 [environ] TENX_PRODUCT=cellranger
2019-10-16 07:58:28 [environ] SGE_TASK_ID=undefined
2019-10-16 07:58:28 [environ] SGE_BINARY_PATH=/usr/local/ogs-ge2011.11.p1/sge_root/bin/linux-x64
2019-10-16 07:58:28 [environ] PATH=/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-tiny-fastq/3.0.0:/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-tiny-ref/3.0.0:/share/pkg.7/cellranger/3.1.0/install/bin/miniconda-cr-cs/4.3.21-miniconda-cr-cs-c10/bin:/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/lib/bin:/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/tenkit/lib/bin:/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/tenkit/bin:/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/bin:/share/pkg.7/cellranger/3.1.0/install/bin/lz4/v1.8.1.2:/share/pkg.7/cellranger/3.1.0/install/bin/martian-cs/v3.2.3/bin:/share/pkg.7/cellranger/3.1.0/install/bin/STAR/5dda596:/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-tiny-fastq/3.0.0:/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-tiny-ref/3.0.0:/share/pkg.7/cellranger/3.1.0/install/bin/miniconda-cr-cs/4.3.21-miniconda-cr-cs-c10/bin:/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/lib/bin:/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/tenkit/lib/bin:/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/tenkit/bin:/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/bin:/share/pkg.7/cellranger/3.1.0/install/bin/lz4/v1.8.1.2:/share/pkg.7/cellranger/3.1.0/install/bin/martian-cs/v3.2.3/bin:/share/pkg.7/cellranger/3.1.0/install/bin/STAR/5dda596:/scratch/49084.1.mem512:/share/pkg.7/cellranger/3.1.0/install/bin:/share/pkg.7/bcl2fastq/2.20/install/bin:/usr/java/default/jre/bin:/usr/java/default/bin:/usr/lib64/qt-3.3/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin:/opt/dell/srvadmin/bin:/bin:/usr4/spclpgm/kkarri/bin:.
2019-10-16 07:58:28 [environ] SGE_STDERR_PATH=/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/Chow1/Chow_1.o49084
2019-10-16 07:58:28 [environ] PWD=/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/Chow1
2019-10-16 07:58:28 [environ] SGE_STDOUT_PATH=/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/Chow1/Chow_1.o49084
2019-10-16 07:58:28 [environ] SGE_ACCOUNT=sge
2019-10-16 07:58:28 [environ] LANG=C
2019-10-16 07:58:28 [environ] JOB_SCRIPT=/var/spool/sge/scc-wj2/job_scripts/49084
2019-10-16 07:58:28 [environ] JOB_NAME=Chow_1
2019-10-16 07:58:28 [environ] SGE_ROOT=/usr/local/sge/sge_root
2019-10-16 07:58:28 [environ] SGE_JOB_SPOOL_DIR=/var/spool/sge/scc-wj2/active_jobs/49084.1
2019-10-16 07:58:28 [environ] ENVIRONMENT=BATCH
2019-10-16 07:58:28 [environ] SHLVL=3
2019-10-16 07:58:28 [environ] HOME=/usr4/spclpgm/kkarri
2019-10-16 07:58:28 [environ] TENX_COPYRIGHT=Copyright (c) 2019 10x Genomics, Inc.  All rights reserved.
2019-10-16 07:58:28 [environ] SGE_CWD_PATH=/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/Chow1
2019-10-16 07:58:28 [environ] NQUEUES=1
2019-10-16 07:58:28 [environ] SGE_O_LOGNAME=kkarri
2019-10-16 07:58:28 [environ] SGE_O_MAIL=/var/spool/mail/kkarri
2019-10-16 07:58:28 [environ] PYTHONPATH=/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/tenkit/lib/python:/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/lib/python:/share/pkg.7/cellranger/3.1.0/install/bin/martian-cs/v3.2.3/adapters/python
2019-10-16 07:58:28 [environ] JOB_ID=49084
2019-10-16 07:58:28 [environ] LOGNAME=kkarri
2019-10-16 07:58:28 [environ] TENX_SCRIPTDIR=/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/bin
2019-10-16 07:58:28 [environ] TENX_BANNER=cellranger count (3.1.0)
Copyright (c) 2019 10x Genomics, Inc.  All rights reserved.
-------------------------------------------------------------------------------
2019-10-16 07:58:28 [environ] XDG_DATA_DIRS=/usr4/spclpgm/kkarri/.local/share/flatpak/exports/share:/var/lib/flatpak/exports/share:/usr/local/share:/usr/share
2019-10-16 07:58:28 [environ] SGE_TASK_FIRST=undefined
2019-10-16 07:58:28 [environ] TENX_VERSION=3.1.0
2019-10-16 07:58:28 [environ] SGE_O_PATH=/share/pkg.7/cellranger/3.1.0/install/bin:/share/pkg.7/bcl2fastq/2.20/install/bin:/usr/java/default/jre/bin:/usr/java/default/bin:/usr/lib64/qt-3.3/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin:/sbin:/opt/dell/srvadmin/bin:/bin:/usr4/spclpgm/kkarri/bin:.
2019-10-16 07:58:28 [environ] SGE_O_HOST=scc4
2019-10-16 07:58:28 [environ] SGE_O_SHELL=/bin/bash
2019-10-16 07:58:28 [environ] NSLOTS=28
2019-10-16 07:58:28 [environ] SGE_STDIN_PATH=/dev/null
2019-10-16 07:58:28 [environ] BASH_FUNC_module()=() {  eval `/usr/local/Modules/$MODULE_VERSION/bin/modulecmd bash $*`
}
2019-10-16 07:58:28 [environ] _=/share/pkg.7/cellranger/3.1.0/install/bin/martian-cs/v3.2.3/bin/mrp
2019-10-16 07:58:28 [environ] MROFLAGS=--vdrmode=rolling
2019-10-16 07:58:28 [environ] MROPATH=/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/tenkit/mro:/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/mro
2019-10-16 07:58:28 [version] MRO Version=3.1.0
2019-10-16 07:58:28 [options] --jobmode=local
2019-10-16 07:58:28 [options] --maxjobs=0
2019-10-16 07:58:28 [options] --jobinterval=0
2019-10-16 07:58:28 [options] --vdrmode=rolling
2019-10-16 07:58:28 [options] --stackvars=false
2019-10-16 07:58:28 [options] --zip=false
2019-10-16 07:58:28 [options] --limit-loadavg=false
2019-10-16 07:58:28 [options] --noexit=false
2019-10-16 07:58:28 [options] --nopreflight=false
2019-10-16 07:58:28 [jobmngr] Job config = /share/pkg.7/cellranger/3.1.0/install/bin/martian-cs/v3.2.3/jobmanagers/config.json
2019-10-16 07:58:28 [jobmngr] Using 28 logical cores available on system.
2019-10-16 07:58:28 [jobmngr] Using 453 GB, 90% of system memory.
2019-10-16 07:58:29 [filesys] Pipestance path /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/Chow1/Chow_1_Test
2019-10-16 07:58:29 [filesys] Pipestance filesystem type nfs
2019-10-16 07:58:29 [filesys] 24 TB and 1,089,529,090 inodes available.
2019-10-16 07:58:29 [filesys] Pipestance filesystem nfs mount options: rw,nosuid,nodev,relatime,rw,vers=3,rsize=1048576,wsize=1048576,namlen=255,hard,proto=tcp,timeo=600,retrans=2,sec=sys,mountaddr=10.241.29.116,mountvers=3,mountport=20048,mountproto=tcp,local_lock=none,addr=10.241.29.116
2019-10-16 07:58:29 [filesys] Bin path /share/pkg.7/cellranger/3.1.0/install/bin/martian-cs/v3.2.3/bin
2019-10-16 07:58:29 [filesys] Bin filesystem type nfs
2019-10-16 07:58:29 [filesys] Bin filesystem nfs mount options: rw,nosuid,nodev,relatime,rw,vers=3,rsize=1048576,wsize=1048576,namlen=255,hard,proto=tcp,timeo=600,retrans=2,sec=sys,mountaddr=192.168.16.24,mountvers=3,mountport=890,mountproto=udp,local_lock=none,addr=192.168.16.24
Serving UI at http://scc-wj2:39369?auth=kThc60suU3I7Kxga4O2B5XiLjdYDfvhafv7gibc59ok

Running preflight checks (please wait)...
2019-10-16 07:58:30 [runtime] (ready)           ID.Chow_1_Test.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF
2019-10-16 07:58:30 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF.fork0.chnk0.main
2019-10-16 07:58:45 [runtime] (chunks_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF
2019-10-16 07:58:46 [runtime] (ready)           ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CELLRANGER_PREFLIGHT_LOCAL
2019-10-16 07:58:46 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CELLRANGER_PREFLIGHT_LOCAL.fork0.chnk0.main
2019-10-16 07:58:46 [runtime] (ready)           ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CELLRANGER_PREFLIGHT
2019-10-16 07:58:47 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CELLRANGER_PREFLIGHT.fork0.chnk0.main
2019-10-16 07:58:52 [runtime] (chunks_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CELLRANGER_PREFLIGHT
2019-10-16 07:58:52 [runtime] (chunks_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CELLRANGER_PREFLIGHT_LOCAL
2019-10-16 07:58:53 [runtime] (ready)           ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY
2019-10-16 07:58:54 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0.main
2019-10-16 07:58:54 [runtime] (ready)           ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.DISABLE_FEATURE_STAGES
2019-10-16 07:58:55 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.DISABLE_FEATURE_STAGES.fork0.chnk0.main
2019-10-16 07:58:55 [runtime] (ready)           ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION
2019-10-16 07:58:56 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION.fork0.chnk0.main
2019-10-16 07:58:57 [runtime] (chunks_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.DISABLE_FEATURE_STAGES
2019-10-16 07:58:58 [runtime] (progress)        ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0: Indexing genome...
2019-10-16 07:58:58 [runtime] (chunks_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION
2019-10-16 07:59:19 [runtime] (progress)        ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0: Building transcriptome...
2019-10-16 07:59:25 [runtime] (progress)        ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0: Building kmer index...
2019-10-16 08:00:14 [runtime] (progress)        ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0: Mapping reads...
2019-10-16 08:00:27 [runtime] (chunks_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY
2019-10-16 08:00:28 [runtime] (ready)           ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS
2019-10-16 08:00:28 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS.fork0.chnk0.main
2019-10-16 08:00:34 [runtime] (chunks_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS
2019-10-16 08:00:34 [runtime] (ready)           ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS
2019-10-16 08:00:35 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.split
2019-10-16 08:00:35 [runtime] (ready)           ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY
2019-10-16 08:00:35 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY.fork0.split
2019-10-16 08:00:37 [runtime] (split_complete)  ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS
2019-10-16 08:00:37 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.chnk0.main
2019-10-16 08:00:38 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.chnk1.main
2019-10-16 08:00:38 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.chnk2.main
2019-10-16 08:00:39 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.chnk3.main
2019-10-16 08:00:40 [runtime] (split_complete)  ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY
2019-10-16 08:00:46 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY.fork0.join
2019-10-16 08:01:33 [runtime] (join_complete)   ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY
2019-10-16 08:05:57 [runtime] (update)          ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0 chunks running (0/4 completed)
2019-10-16 08:10:58 [runtime] (update)          ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0 chunks running (1/4 completed)
2019-10-16 08:15:50 [runtime] (chunks_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS
2019-10-16 08:15:50 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.join
2019-10-16 08:15:53 [runtime] (join_complete)   ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS
2019-10-16 08:15:54 [runtime] (ready)           ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS
2019-10-16 08:15:54 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.split
2019-10-16 08:16:02 [runtime] (split_complete)  ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS
2019-10-16 08:16:09 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk00.main
2019-10-16 08:16:09 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk01.main
2019-10-16 08:16:10 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk02.main
2019-10-16 08:16:10 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk03.main
2019-10-16 08:16:12 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk04.main
2019-10-16 08:16:12 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk05.main
2019-10-16 08:16:13 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk06.main
2019-10-16 08:16:14 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk07.main
2019-10-16 08:16:15 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk08.main
2019-10-16 08:16:15 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk09.main
2019-10-16 08:16:17 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk10.main
2019-10-16 08:16:17 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk11.main
2019-10-16 08:16:18 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk12.main
2019-10-16 08:16:19 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk13.main
2019-10-16 08:16:19 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk14.main
2019-10-16 08:16:20 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk15.main
2019-10-16 08:16:21 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk16.main
2019-10-16 08:16:22 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk17.main
2019-10-16 08:16:23 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk18.main
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2019-10-16 08:16:30 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk25.main
2019-10-16 08:16:31 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk26.main
2019-10-16 08:16:32 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk27.main
2019-10-16 08:16:32 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk28.main
2019-10-16 08:16:33 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk29.main
2019-10-16 08:16:34 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk30.main
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2019-10-16 08:29:27 [runtime] (split_complete)  ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS
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2019-10-16 08:29:31 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk01.main
2019-10-16 08:29:31 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk02.main
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2019-10-16 08:29:33 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk05.main
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2019-10-16 08:30:01 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk18.main
2019-10-16 08:30:03 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk19.main
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2019-10-16 08:30:09 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk26.main
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2019-10-16 09:05:40 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS.fork0.join
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2019-10-16 09:05:57 [runtime] (ready)           ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS
2019-10-16 09:05:58 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.split
2019-10-16 09:06:02 [runtime] (split_complete)  ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS
2019-10-16 09:06:08 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk00.main
2019-10-16 09:06:08 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk01.main
2019-10-16 09:06:08 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk02.main
2019-10-16 09:06:09 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk03.main
2019-10-16 09:06:10 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk04.main
2019-10-16 09:06:10 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk05.main
2019-10-16 09:06:11 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk06.main
2019-10-16 09:06:11 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk07.main
2019-10-16 09:06:12 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk08.main
2019-10-16 09:06:12 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk09.main
2019-10-16 09:06:13 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk10.main
2019-10-16 09:06:13 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk11.main
2019-10-16 09:06:14 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk12.main
2019-10-16 09:06:14 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk13.main
2019-10-16 09:06:15 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk14.main
2019-10-16 09:06:17 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk15.main
2019-10-16 09:06:19 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk16.main
2019-10-16 09:06:21 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk17.main
2019-10-16 09:06:21 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk18.main
2019-10-16 09:06:22 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk19.main
2019-10-16 09:06:22 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk20.main
2019-10-16 09:06:24 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk21.main
2019-10-16 09:06:26 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk22.main
2019-10-16 09:06:27 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk23.main
2019-10-16 09:06:28 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk24.main
2019-10-16 09:06:28 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk25.main
2019-10-16 09:06:29 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk26.main
2019-10-16 09:06:29 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk27.main
2019-10-16 09:06:30 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk28.main
2019-10-16 09:06:30 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk29.main
2019-10-16 09:06:31 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk30.main
2019-10-16 09:06:31 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk31.main
2019-10-16 09:06:32 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk32.main
2019-10-16 09:06:32 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk33.main
2019-10-16 09:06:32 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk34.main
2019-10-16 09:11:33 [runtime] (update)          ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0 chunks running (7/35 completed)
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2019-10-16 09:14:18 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.join
2019-10-16 09:17:07 [runtime] (join_complete)   ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS
2019-10-16 09:17:17 [runtime] (ready)           ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC
2019-10-16 09:17:17 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.split
2019-10-16 09:17:22 [runtime] (split_complete)  ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC
2019-10-16 09:17:26 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk00.main
2019-10-16 09:17:26 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk01.main
2019-10-16 09:17:27 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk02.main
2019-10-16 09:17:27 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk03.main
2019-10-16 09:17:28 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk04.main
2019-10-16 09:17:28 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk05.main
2019-10-16 09:17:29 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk06.main
2019-10-16 09:17:30 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk07.main
2019-10-16 09:17:30 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk08.main
2019-10-16 09:17:31 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk09.main
2019-10-16 09:17:31 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk10.main
2019-10-16 09:17:32 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk11.main
2019-10-16 09:17:33 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk12.main
2019-10-16 09:17:33 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk13.main
2019-10-16 09:17:33 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk14.main
2019-10-16 09:17:34 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk15.main
2019-10-16 09:17:34 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk16.main
2019-10-16 09:17:35 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk17.main
2019-10-16 09:17:35 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk18.main
2019-10-16 09:17:35 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk19.main
2019-10-16 09:17:36 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk20.main
2019-10-16 09:17:36 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk21.main
2019-10-16 09:17:39 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk22.main
2019-10-16 09:17:40 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk23.main
2019-10-16 09:17:40 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk24.main
2019-10-16 09:17:40 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk25.main
2019-10-16 09:17:40 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk26.main
2019-10-16 09:17:41 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk27.main
2019-10-16 09:17:41 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk28.main
2019-10-16 09:17:41 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk29.main
2019-10-16 09:17:42 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk30.main
2019-10-16 09:17:42 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk31.main
2019-10-16 09:17:42 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk32.main
2019-10-16 09:17:42 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk33.main
2019-10-16 09:17:43 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk34.main
2019-10-16 09:23:59 [runtime] (update)          ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0 chunks running (14/35 completed)
2019-10-16 09:27:34 [runtime] (chunks_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC
2019-10-16 09:27:35 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.join
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2019-10-16 09:27:48 [runtime] (ready)           ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC
2019-10-16 09:27:48 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.split
2019-10-16 09:27:52 [runtime] (split_complete)  ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC
2019-10-16 09:27:53 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk00.main
2019-10-16 09:27:54 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk01.main
2019-10-16 09:27:55 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk02.main
2019-10-16 09:27:55 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk03.main
2019-10-16 09:27:56 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk04.main
2019-10-16 09:27:57 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk05.main
2019-10-16 09:27:57 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk06.main
2019-10-16 09:27:58 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk07.main
2019-10-16 09:27:58 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk08.main
2019-10-16 09:27:59 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk09.main
2019-10-16 09:28:00 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk10.main
2019-10-16 09:28:00 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk11.main
2019-10-16 09:28:01 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk12.main
2019-10-16 09:28:01 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk13.main
2019-10-16 09:28:02 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk14.main
2019-10-16 09:28:03 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk15.main
2019-10-16 09:28:05 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk16.main
2019-10-16 09:33:05 [runtime] (update)          ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0 chunks running (1/17 completed)
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2019-10-16 09:35:54 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.join
2019-10-16 09:41:59 [runtime] (update)          ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0 join_running
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2019-10-16 09:43:29 [runtime] (ready)           ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES
2019-10-16 09:43:29 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.split
2019-10-16 09:43:53 [runtime] (split_complete)  ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES
2019-10-16 09:43:57 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk00.main
2019-10-16 09:43:57 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk01.main
2019-10-16 09:43:58 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk02.main
2019-10-16 09:43:58 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk03.main
2019-10-16 09:43:59 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk04.main
2019-10-16 09:44:00 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk05.main
2019-10-16 09:44:00 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk06.main
2019-10-16 09:44:01 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk07.main
2019-10-16 09:44:01 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk08.main
2019-10-16 09:44:02 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk09.main
2019-10-16 09:44:03 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk10.main
2019-10-16 09:44:04 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk11.main
2019-10-16 09:44:05 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk12.main
2019-10-16 09:44:06 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk13.main
2019-10-16 09:44:07 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk14.main
2019-10-16 09:44:07 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk15.main
2019-10-16 09:44:07 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk16.main
2019-10-16 09:44:09 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk17.main
2019-10-16 09:44:09 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk18.main
2019-10-16 09:44:10 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk19.main
2019-10-16 09:44:11 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk20.main
2019-10-16 09:44:12 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk21.main
2019-10-16 09:44:13 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk22.main
2019-10-16 09:44:13 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk23.main
2019-10-16 09:44:14 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk24.main
2019-10-16 09:44:14 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk25.main
2019-10-16 09:44:15 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk26.main
2019-10-16 09:44:15 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk27.main
2019-10-16 09:44:16 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk28.main
2019-10-16 09:44:16 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk29.main
2019-10-16 09:44:17 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk30.main
2019-10-16 09:44:18 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk31.main
2019-10-16 09:44:18 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk32.main
2019-10-16 09:44:18 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk33.main
2019-10-16 09:44:18 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk34.main
2019-10-16 09:44:19 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk35.main
2019-10-16 09:44:19 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk36.main
2019-10-16 09:44:19 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk37.main
2019-10-16 09:44:20 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk38.main
2019-10-16 09:44:20 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk39.main
2019-10-16 09:44:20 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk40.main
2019-10-16 09:44:20 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk41.main
2019-10-16 09:44:20 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk42.main
2019-10-16 09:44:21 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk43.main
2019-10-16 09:50:21 [runtime] (update)          ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0 chunks running (29/44 completed)
2019-10-16 09:52:15 [runtime] (chunks_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES
2019-10-16 09:52:17 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.join
2019-10-16 09:52:24 [runtime] (join_complete)   ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES
2019-10-16 09:52:28 [runtime] (ready)           ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES
2019-10-16 09:52:28 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.split
2019-10-16 09:52:29 [runtime] (ready)           ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS
2019-10-16 09:52:29 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.split
2019-10-16 09:52:33 [runtime] (split_complete)  ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS
2019-10-16 09:52:37 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk00.main
2019-10-16 09:52:38 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk01.main
2019-10-16 09:52:38 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk02.main
2019-10-16 09:52:39 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk03.main
2019-10-16 09:52:39 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk04.main
2019-10-16 09:52:40 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk05.main
2019-10-16 09:52:41 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk06.main
2019-10-16 09:52:41 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk07.main
2019-10-16 09:52:42 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk08.main
2019-10-16 09:52:44 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk09.main
2019-10-16 09:52:45 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk10.main
2019-10-16 09:52:45 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk11.main
2019-10-16 09:52:46 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk12.main
2019-10-16 09:52:48 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk13.main
2019-10-16 09:52:49 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk14.main
2019-10-16 09:52:50 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk15.main
2019-10-16 09:52:50 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk16.main
2019-10-16 09:52:51 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk17.main
2019-10-16 09:52:54 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk18.main
2019-10-16 09:52:58 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk19.main
2019-10-16 09:53:04 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk20.main
2019-10-16 09:53:15 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk21.main
2019-10-16 09:53:21 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk22.main
2019-10-16 09:53:30 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk23.main
2019-10-16 09:53:38 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk24.main
2019-10-16 09:53:46 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk25.main
2019-10-16 09:53:54 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk26.main
2019-10-16 09:54:05 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk27.main
2019-10-16 09:54:18 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk28.main
2019-10-16 09:54:29 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk29.main
2019-10-16 09:54:40 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk30.main
2019-10-16 09:54:54 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk31.main
2019-10-16 09:55:10 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk32.main
2019-10-16 09:55:25 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk33.main
2019-10-16 09:55:40 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk34.main
2019-10-16 09:55:52 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk35.main
2019-10-16 09:56:04 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk36.main
2019-10-16 09:56:17 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk37.main
2019-10-16 09:56:26 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk38.main
2019-10-16 09:56:38 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk39.main
2019-10-16 09:56:50 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk40.main
2019-10-16 09:57:02 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk41.main
2019-10-16 09:57:18 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk42.main
2019-10-16 09:57:31 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk43.main
2019-10-16 10:02:07 [runtime] (split_complete)  ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES
2019-10-16 10:02:50 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk00.main
2019-10-16 10:02:50 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk01.main
2019-10-16 10:02:51 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk02.main
2019-10-16 10:02:51 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk03.main
2019-10-16 10:02:52 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk04.main
2019-10-16 10:02:52 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk05.main
2019-10-16 10:02:53 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk06.main
2019-10-16 10:02:53 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk07.main
2019-10-16 10:02:54 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk08.main
2019-10-16 10:02:56 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk09.main
2019-10-16 10:02:58 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk10.main
2019-10-16 10:03:00 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk11.main
2019-10-16 10:03:05 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk12.main
2019-10-16 10:03:11 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk13.main
2019-10-16 10:03:16 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk14.main
2019-10-16 10:03:23 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk15.main
2019-10-16 10:03:27 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk16.main
2019-10-16 10:03:28 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk17.main
2019-10-16 10:03:31 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk18.main
2019-10-16 10:03:32 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk19.main
2019-10-16 10:03:32 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk20.main
2019-10-16 10:03:33 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk21.main
2019-10-16 10:03:35 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk22.main
2019-10-16 10:03:39 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk23.main
2019-10-16 10:03:43 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk24.main
2019-10-16 10:03:48 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk25.main
2019-10-16 10:03:55 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk26.main
2019-10-16 10:03:59 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk27.main
2019-10-16 10:04:01 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk28.main
2019-10-16 10:04:03 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk29.main
2019-10-16 10:04:05 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk30.main
2019-10-16 10:04:07 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk31.main
2019-10-16 10:04:09 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk32.main
2019-10-16 10:04:09 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk33.main
2019-10-16 10:04:10 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk34.main
2019-10-16 10:04:10 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk35.main
2019-10-16 10:04:12 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk36.main
2019-10-16 10:04:16 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk37.main
2019-10-16 10:04:17 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk38.main
2019-10-16 10:04:18 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk39.main
2019-10-16 10:04:19 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk40.main
2019-10-16 10:04:21 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk41.main
2019-10-16 10:04:24 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk42.main
2019-10-16 10:04:27 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk43.main
2019-10-16 10:06:30 [runtime] (update)          ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 chunks running (29/44 completed)
2019-10-16 10:06:33 [runtime] (chunks_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS
2019-10-16 10:06:33 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.join
2019-10-16 10:08:08 [jobmngr] Need 6 threads to start the next job (1 available).  Waiting for jobs to complete.
2019-10-16 10:08:12 [jobmngr] Need 6 threads to start the next job (2 available).  Waiting for jobs to complete.
2019-10-16 10:08:18 [jobmngr] Need 6 threads to start the next job (3 available).  Waiting for jobs to complete.
2019-10-16 10:08:20 [jobmngr] Need 6 threads to start the next job (4 available).  Waiting for jobs to complete.
2019-10-16 10:08:25 [jobmngr] Need 6 threads to start the next job (5 available).  Waiting for jobs to complete.
2019-10-16 10:10:00 [runtime] (chunks_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES
2019-10-16 10:10:01 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.join
2019-10-16 10:12:39 [runtime] (update)          ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 join_running
2019-10-16 10:14:25 [runtime] (join_complete)   ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES
2019-10-16 10:14:33 [runtime] (ready)           ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES
2019-10-16 10:14:34 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES.fork0.split
2019-10-16 10:14:42 [runtime] (split_complete)  ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES
2019-10-16 10:14:43 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES.fork0.join
2019-10-16 10:16:38 [runtime] (join_complete)   ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES
2019-10-16 10:16:39 [runtime] (ready)           ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES
2019-10-16 10:16:40 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.split
2019-10-16 10:16:40 [runtime] (ready)           ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT
2019-10-16 10:16:41 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT.fork0.chnk0.main
2019-10-16 10:16:45 [runtime] (split_complete)  ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES
2019-10-16 10:16:53 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk00.main
2019-10-16 10:16:54 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk01.main
2019-10-16 10:16:55 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk02.main
2019-10-16 10:16:56 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk03.main
2019-10-16 10:16:56 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk04.main
2019-10-16 10:16:57 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk05.main
2019-10-16 10:16:58 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk06.main
2019-10-16 10:16:58 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk07.main
2019-10-16 10:16:59 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk08.main
2019-10-16 10:17:01 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk09.main
2019-10-16 10:17:02 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk10.main
2019-10-16 10:17:03 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk11.main
2019-10-16 10:17:04 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk12.main
2019-10-16 10:17:05 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk13.main
2019-10-16 10:17:06 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk14.main
2019-10-16 10:17:07 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk15.main
2019-10-16 10:17:08 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk16.main
2019-10-16 10:17:09 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk17.main
2019-10-16 10:17:10 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk18.main
2019-10-16 10:17:10 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk19.main
2019-10-16 10:17:11 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk20.main
2019-10-16 10:17:12 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk21.main
2019-10-16 10:17:13 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk22.main
2019-10-16 10:17:14 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk23.main
2019-10-16 10:17:15 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk24.main
2019-10-16 10:17:15 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk25.main
2019-10-16 10:17:16 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk26.main
2019-10-16 10:17:18 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk27.main
2019-10-16 10:17:18 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk28.main
2019-10-16 10:17:18 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk29.main
2019-10-16 10:17:19 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk30.main
2019-10-16 10:17:19 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk31.main
2019-10-16 10:17:19 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk32.main
2019-10-16 10:17:20 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk33.main
2019-10-16 10:17:20 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk34.main
2019-10-16 10:17:20 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk35.main
2019-10-16 10:17:21 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk36.main
2019-10-16 10:17:21 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk37.main
2019-10-16 10:17:22 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk38.main
2019-10-16 10:17:22 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk39.main
2019-10-16 10:17:22 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk40.main
2019-10-16 10:17:23 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk41.main
2019-10-16 10:17:23 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk42.main
2019-10-16 10:17:24 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk43.main
2019-10-16 10:17:27 [runtime] (chunks_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT
2019-10-16 10:17:29 [runtime] (ready)           ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX
2019-10-16 10:17:29 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX.fork0.split
2019-10-16 10:18:41 [runtime] (update)          ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 join_running
2019-10-16 10:18:45 [runtime] (split_complete)  ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX
2019-10-16 10:18:46 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX.fork0.join
2019-10-16 10:18:58 [runtime] (join_complete)   ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX
2019-10-16 10:19:00 [runtime] (ready)           ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_FBPCA
2019-10-16 10:19:01 [runtime] (disabled)        ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_FBPCA
2019-10-16 10:19:01 [runtime] (ready)           ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CORRECT_CHEMISTRY_BATCH
2019-10-16 10:19:02 [runtime] (disabled)        ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CORRECT_CHEMISTRY_BATCH
2019-10-16 10:19:02 [runtime] (ready)           ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA
2019-10-16 10:19:02 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA.fork0.split
2019-10-16 10:19:02 [runtime] (ready)           ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS
2019-10-16 10:19:03 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS.fork0.split
2019-10-16 10:19:08 [runtime] (split_complete)  ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA
2019-10-16 10:19:08 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA.fork0.chnk0.main
2019-10-16 10:19:10 [runtime] (split_complete)  ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS
2019-10-16 10:19:11 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS.fork0.join
2019-10-16 10:19:15 [runtime] (join_complete)   ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS
2019-10-16 10:19:23 [runtime] (chunks_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA
2019-10-16 10:19:24 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA.fork0.join
2019-10-16 10:19:41 [runtime] (join_complete)   ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA
2019-10-16 10:19:42 [runtime] (chunks_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES
2019-10-16 10:19:43 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.join
2019-10-16 10:19:43 [runtime] (ready)           ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT
2019-10-16 10:19:44 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT.fork0.chnk0.main
2019-10-16 10:19:52 [runtime] (chunks_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT
2019-10-16 10:19:59 [runtime] (ready)           ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING
2019-10-16 10:19:59 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING.fork0.split
2019-10-16 10:19:59 [runtime] (ready)           ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE
2019-10-16 10:20:00 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE.fork0.split
2019-10-16 10:20:02 [runtime] (ready)           ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS
2019-10-16 10:20:03 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.split
2019-10-16 10:20:04 [runtime] (ready)           ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP
2019-10-16 10:20:05 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP.fork0.split
2019-10-16 10:20:08 [runtime] (split_complete)  ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE
2019-10-16 10:20:09 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE.fork0.chnk0.main
2019-10-16 10:20:09 [runtime] (split_complete)  ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING
2019-10-16 10:20:10 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING.fork0.chnk0.main
2019-10-16 10:20:13 [runtime] (split_complete)  ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS
2019-10-16 10:20:14 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk0.main
2019-10-16 10:20:15 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk1.main
2019-10-16 10:20:17 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk2.main
2019-10-16 10:20:19 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk3.main
2019-10-16 10:20:20 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk4.main
2019-10-16 10:20:21 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk5.main
2019-10-16 10:20:22 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk6.main
2019-10-16 10:20:23 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk7.main
2019-10-16 10:20:24 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk8.main
2019-10-16 10:20:37 [runtime] (chunks_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING
2019-10-16 10:20:37 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING.fork0.join
2019-10-16 10:20:37 [runtime] (split_complete)  ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP
2019-10-16 10:20:38 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP.fork0.chnk0.main
2019-10-16 10:20:42 [runtime] (chunks_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS
2019-10-16 10:20:42 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.join
2019-10-16 10:20:43 [runtime] (chunks_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE
2019-10-16 10:20:43 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE.fork0.join
2019-10-16 10:20:50 [runtime] (join_complete)   ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE
2019-10-16 10:20:52 [runtime] (join_complete)   ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING
2019-10-16 10:20:53 [runtime] (join_complete)   ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS
2019-10-16 10:20:55 [runtime] (ready)           ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS
2019-10-16 10:20:55 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS.fork0.split
2019-10-16 10:20:59 [runtime] (split_complete)  ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS
2019-10-16 10:20:59 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS.fork0.chnk0.main
2019-10-16 10:21:04 [runtime] (chunks_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS
2019-10-16 10:21:05 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS.fork0.join
2019-10-16 10:21:09 [runtime] (chunks_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP
2019-10-16 10:21:10 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP.fork0.join
2019-10-16 10:21:19 [runtime] (join_complete)   ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS
2019-10-16 10:21:20 [runtime] (join_complete)   ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP
2019-10-16 10:21:22 [runtime] (join_complete)   ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES
2019-10-16 10:21:25 [runtime] (ready)           ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.COMBINE_CLUSTERING
2019-10-16 10:21:25 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.COMBINE_CLUSTERING.fork0.chnk0.main
2019-10-16 10:21:27 [runtime] (ready)           ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS
2019-10-16 10:21:27 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS.fork0.split
2019-10-16 10:21:32 [runtime] (split_complete)  ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS
2019-10-16 10:21:33 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS.fork0.chnk0.main
2019-10-16 10:21:34 [runtime] (chunks_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.COMBINE_CLUSTERING
2019-10-16 10:21:36 [runtime] (ready)           ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION
2019-10-16 10:21:36 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.split
2019-10-16 10:21:40 [runtime] (split_complete)  ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION
2019-10-16 10:21:41 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk00.main
2019-10-16 10:21:42 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk01.main
2019-10-16 10:21:42 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk02.main
2019-10-16 10:21:43 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk03.main
2019-10-16 10:21:44 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk04.main
2019-10-16 10:21:44 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk05.main
2019-10-16 10:21:44 [jobmngr] Need 4 threads to start the next job (1 available).  Waiting for jobs to complete.
2019-10-16 10:21:45 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk06.main
2019-10-16 10:21:45 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk07.main
2019-10-16 10:21:46 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk08.main
2019-10-16 10:21:46 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk09.main
2019-10-16 10:21:56 [jobmngr] Need 4 threads to start the next job (1 available).  Waiting for jobs to complete.
2019-10-16 10:22:02 [jobmngr] Need 4 threads to start the next job (1 available).  Waiting for jobs to complete.
2019-10-16 10:22:06 [jobmngr] Need 4 threads to start the next job (1 available).  Waiting for jobs to complete.
2019-10-16 10:22:26 [jobmngr] Need 4 threads to start the next job (1 available).  Waiting for jobs to complete.
2019-10-16 10:23:22 [runtime] (chunks_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION
2019-10-16 10:23:23 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.join
2019-10-16 10:23:36 [runtime] (chunks_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS
2019-10-16 10:23:36 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS.fork0.join
2019-10-16 10:23:37 [runtime] (join_complete)   ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION
2019-10-16 10:23:39 [runtime] (ready)           ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS
2019-10-16 10:23:39 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS.fork0.split
2019-10-16 10:23:42 [runtime] (join_complete)   ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS
2019-10-16 10:23:44 [runtime] (ready)           ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS
2019-10-16 10:23:44 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS.fork0.split
2019-10-16 10:23:45 [runtime] (split_complete)  ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS
2019-10-16 10:23:45 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS.fork0.chnk0.main
2019-10-16 10:23:49 [runtime] (split_complete)  ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS
2019-10-16 10:23:50 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS.fork0.chnk0.main
2019-10-16 10:23:55 [runtime] (chunks_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS
2019-10-16 10:23:56 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS.fork0.join
2019-10-16 10:24:02 [runtime] (join_complete)   ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS
2019-10-16 10:24:07 [runtime] (ready)           ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.CALL_PROTOSPACERS
2019-10-16 10:24:07 [runtime] (disabled)        ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.CALL_PROTOSPACERS
2019-10-16 10:24:08 [runtime] (chunks_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS
2019-10-16 10:24:08 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS.fork0.join
2019-10-16 10:24:09 [runtime] (ready)           ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET
2019-10-16 10:24:09 [runtime] (disabled)        ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET
2019-10-16 10:24:09 [runtime] (ready)           ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE
2019-10-16 10:24:09 [runtime] (disabled)        ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE
2019-10-16 10:24:10 [runtime] (ready)           ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS
2019-10-16 10:24:11 [runtime] (disabled)        ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS
2019-10-16 10:24:11 [runtime] (disabled)        ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER
2019-10-16 10:24:26 [runtime] (join_complete)   ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS
2019-10-16 10:24:32 [runtime] (ready)           ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS
2019-10-16 10:24:34 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS.fork0.chnk0.main
2019-10-16 10:24:40 [runtime] (update)          ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 join_running
2019-10-16 10:24:44 [runtime] (chunks_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS
2019-10-16 10:24:51 [runtime] (ready)           ID.Chow_1_Test.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS
2019-10-16 10:24:52 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS.fork0.split
2019-10-16 10:24:59 [runtime] (split_complete)  ID.Chow_1_Test.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS
2019-10-16 10:24:59 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS.fork0.chnk0.main
2019-10-16 10:25:17 [runtime] (chunks_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS
2019-10-16 10:25:18 [runtime] (run:local)       ID.Chow_1_Test.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS.fork0.join
2019-10-16 10:25:23 [runtime] (join_complete)   ID.Chow_1_Test.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS
2019-10-16 10:30:41 [runtime] (update)          ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 join_running
2019-10-16 10:36:42 [runtime] (update)          ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 join_running
2019-10-16 10:37:16 [runtime] (join_complete)   ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS
2019-10-16 10:37:29 [runtime] VDR killed 1955 files, 210 GB.

Outputs:
- Run summary HTML:                         /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/Chow1/Chow_1_Test/outs/web_summary.html
- Run summary CSV:                          /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/Chow1/Chow_1_Test/outs/metrics_summary.csv
- BAM:                                      /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/Chow1/Chow_1_Test/outs/possorted_genome_bam.bam
- BAM index:                                /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/Chow1/Chow_1_Test/outs/possorted_genome_bam.bam.bai
- Filtered feature-barcode matrices MEX:    /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/Chow1/Chow_1_Test/outs/filtered_feature_bc_matrix
- Filtered feature-barcode matrices HDF5:   /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/Chow1/Chow_1_Test/outs/filtered_feature_bc_matrix.h5
- Unfiltered feature-barcode matrices MEX:  /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/Chow1/Chow_1_Test/outs/raw_feature_bc_matrix
- Unfiltered feature-barcode matrices HDF5: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/Chow1/Chow_1_Test/outs/raw_feature_bc_matrix.h5
- Secondary analysis output CSV:            /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/Chow1/Chow_1_Test/outs/analysis
- Per-molecule read information:            /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/Chow1/Chow_1_Test/outs/molecule_info.h5
- CRISPR-specific analysis:                 null
- Loupe Cell Browser file:                  /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/Chow1/Chow_1_Test/outs/cloupe.cloupe
- Feature Reference:                        null

2019-10-16 10:37:30 [perform] Serializing pipestance performance data.
Waiting 6 seconds for UI to do final refresh.
Pipestance completed successfully!

2019-10-16 10:37:37 Shutting down.
2019-10-16 10:37:37 [jobmngr] Highest memory usage observed: {
  "rss": 90612367360,
  "shared": 736833536,
  "vmem": 99484012544,
  "text": 118358016,
  "stack": 95535058944,
  "proc_count": 342
}
