========================================================== Starting on : Wed Oct 16 07:58:24 EDT 2019 Running on node : scc-wj2 Current job ID : 49084 Current job name : Chow_1 Task index number : ========================================================== /share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/bin cellranger count (3.1.0) Copyright (c) 2019 10x Genomics, Inc. All rights reserved. ------------------------------------------------------------------------------- Martian Runtime - '3.1.0-v3.2.3' Serving UI at http://scc-wj2:39369?auth=kThc60suU3I7Kxga4O2B5XiLjdYDfvhafv7gibc59ok Running preflight checks (please wait)... 2019-10-16 07:58:30 [runtime] (ready) ID.Chow_1_Test.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF 2019-10-16 07:58:30 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF.fork0.chnk0.main 2019-10-16 07:58:45 [runtime] (chunks_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF Checking sample info... Checking FASTQ folder... Checking libraries... Checking reference... Checking reference_path (/restricted/projectnb/waxmanlab/kkarri/tabula_muris/drop-seq/mm10_ref/updated-usethis-mm10plus-pcg-ercc-lnc-nodups) on scc-wj2... Checking chemistry... Checking optional arguments... mrc: '3.1.0-v3.2.3' mrp: '3.1.0-v3.2.3' Anaconda: Python 2.7.14 :: Anaconda, Inc. numpy: 1.14.2 scipy: 1.0.1 pysam: 0.14.1 h5py: 2.8.0 pandas: 0.22.0 STAR: STAR_2.5.1b samtools: samtools 1.7 Using htslib 1.7 Copyright (C) 2018 Genome Research Ltd. 2019-10-16 07:58:53 [runtime] (ready) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY 2019-10-16 07:58:54 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0.main 2019-10-16 07:58:54 [runtime] (ready) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.DISABLE_FEATURE_STAGES 2019-10-16 07:58:55 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.DISABLE_FEATURE_STAGES.fork0.chnk0.main 2019-10-16 07:58:55 [runtime] (ready) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION 2019-10-16 07:58:56 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION.fork0.chnk0.main 2019-10-16 07:58:57 [runtime] (chunks_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.DISABLE_FEATURE_STAGES 2019-10-16 07:58:58 [runtime] (progress) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0: Indexing genome... 2019-10-16 07:58:58 [runtime] (chunks_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION 2019-10-16 07:59:19 [runtime] (progress) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0: Building transcriptome... 2019-10-16 07:59:25 [runtime] (progress) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0: Building kmer index... 2019-10-16 08:00:14 [runtime] (progress) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0: Mapping reads... 2019-10-16 08:00:27 [runtime] (chunks_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY 2019-10-16 08:00:28 [runtime] (ready) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS 2019-10-16 08:00:28 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS.fork0.chnk0.main 2019-10-16 08:00:34 [runtime] (chunks_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS 2019-10-16 08:00:34 [runtime] (ready) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS 2019-10-16 08:00:35 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.split 2019-10-16 08:00:35 [runtime] (ready) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY 2019-10-16 08:00:35 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY.fork0.split 2019-10-16 08:00:37 [runtime] (split_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS 2019-10-16 08:00:37 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.chnk0.main 2019-10-16 08:00:38 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.chnk1.main 2019-10-16 08:00:38 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.chnk2.main 2019-10-16 08:00:39 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.chnk3.main 2019-10-16 08:00:40 [runtime] (split_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY 2019-10-16 08:00:46 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY.fork0.join 2019-10-16 08:01:33 [runtime] (join_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY 2019-10-16 08:05:57 [runtime] (update) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0 chunks running (0/4 completed) 2019-10-16 08:10:58 [runtime] (update) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0 chunks running (1/4 completed) 2019-10-16 08:15:50 [runtime] (chunks_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS 2019-10-16 08:15:50 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.join 2019-10-16 08:15:53 [runtime] (join_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS 2019-10-16 08:15:54 [runtime] (ready) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS 2019-10-16 08:15:54 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.split 2019-10-16 08:16:02 [runtime] (split_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS 2019-10-16 08:16:09 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk00.main 2019-10-16 08:16:09 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk01.main 2019-10-16 08:16:10 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk02.main 2019-10-16 08:16:10 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk03.main 2019-10-16 08:16:12 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk04.main 2019-10-16 08:16:12 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk05.main 2019-10-16 08:16:13 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk06.main 2019-10-16 08:16:14 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk07.main 2019-10-16 08:16:15 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk08.main 2019-10-16 08:16:15 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk09.main 2019-10-16 08:16:17 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk10.main 2019-10-16 08:16:17 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk11.main 2019-10-16 08:16:18 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk12.main 2019-10-16 08:16:19 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk13.main 2019-10-16 08:16:19 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk14.main 2019-10-16 08:16:20 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk15.main 2019-10-16 08:16:21 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk16.main 2019-10-16 08:16:22 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk17.main 2019-10-16 08:16:23 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk18.main 2019-10-16 08:16:24 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk19.main 2019-10-16 08:16:25 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk20.main 2019-10-16 08:16:26 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk21.main 2019-10-16 08:16:28 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk22.main 2019-10-16 08:16:29 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk23.main 2019-10-16 08:16:30 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk24.main 2019-10-16 08:16:30 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk25.main 2019-10-16 08:16:31 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk26.main 2019-10-16 08:16:32 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk27.main 2019-10-16 08:16:32 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk28.main 2019-10-16 08:16:33 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk29.main 2019-10-16 08:16:34 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk30.main 2019-10-16 08:16:34 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk31.main 2019-10-16 08:16:35 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk32.main 2019-10-16 08:16:36 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk33.main 2019-10-16 08:16:36 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk34.main 2019-10-16 08:16:36 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk35.main 2019-10-16 08:16:37 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk36.main 2019-10-16 08:16:37 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk37.main 2019-10-16 08:22:17 [runtime] (update) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0 chunks running (2/38 completed) 2019-10-16 08:27:20 [runtime] (update) 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ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk00.main 2019-10-16 08:29:31 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk01.main 2019-10-16 08:29:31 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk02.main 2019-10-16 08:29:32 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk03.main 2019-10-16 08:29:32 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk04.main 2019-10-16 08:29:33 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk05.main 2019-10-16 08:29:33 [runtime] (run:local) 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ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk12.main 2019-10-16 08:29:44 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk13.main 2019-10-16 08:29:48 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk14.main 2019-10-16 08:29:52 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk15.main 2019-10-16 08:29:55 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk16.main 2019-10-16 08:29:58 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk17.main 2019-10-16 08:30:01 [runtime] (run:local) 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ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk27.main 2019-10-16 10:04:01 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk28.main 2019-10-16 10:04:03 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk29.main 2019-10-16 10:04:05 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk30.main 2019-10-16 10:04:07 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk31.main 2019-10-16 10:04:09 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk32.main 2019-10-16 10:04:09 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk33.main 2019-10-16 10:04:10 [runtime] (run:local) 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ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk41.main 2019-10-16 10:04:24 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk42.main 2019-10-16 10:04:27 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk43.main 2019-10-16 10:06:30 [runtime] (update) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 chunks running (29/44 completed) 2019-10-16 10:06:33 [runtime] (chunks_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS 2019-10-16 10:06:33 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.join 2019-10-16 10:10:00 [runtime] (chunks_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES 2019-10-16 10:10:01 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.join 2019-10-16 10:12:39 [runtime] (update) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 join_running 2019-10-16 10:14:25 [runtime] (join_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES 2019-10-16 10:14:33 [runtime] (ready) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES 2019-10-16 10:14:34 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES.fork0.split 2019-10-16 10:14:42 [runtime] (split_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES 2019-10-16 10:14:43 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES.fork0.join 2019-10-16 10:16:38 [runtime] (join_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES 2019-10-16 10:16:39 [runtime] (ready) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES 2019-10-16 10:16:40 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.split 2019-10-16 10:16:40 [runtime] (ready) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT 2019-10-16 10:16:41 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT.fork0.chnk0.main 2019-10-16 10:16:45 [runtime] (split_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES 2019-10-16 10:16:53 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk00.main 2019-10-16 10:16:54 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk01.main 2019-10-16 10:16:55 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk02.main 2019-10-16 10:16:56 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk03.main 2019-10-16 10:16:56 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk04.main 2019-10-16 10:16:57 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk05.main 2019-10-16 10:16:58 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk06.main 2019-10-16 10:16:58 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk07.main 2019-10-16 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ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk27.main 2019-10-16 10:17:18 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk28.main 2019-10-16 10:17:18 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk29.main 2019-10-16 10:17:19 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk30.main 2019-10-16 10:17:19 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk31.main 2019-10-16 10:17:19 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk32.main 2019-10-16 10:17:20 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk33.main 2019-10-16 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ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk40.main 2019-10-16 10:17:23 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk41.main 2019-10-16 10:17:23 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk42.main 2019-10-16 10:17:24 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk43.main 2019-10-16 10:17:27 [runtime] (chunks_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT 2019-10-16 10:17:29 [runtime] (ready) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX 2019-10-16 10:17:29 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX.fork0.split 2019-10-16 10:18:41 [runtime] (update) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 join_running 2019-10-16 10:18:45 [runtime] (split_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX 2019-10-16 10:18:46 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX.fork0.join 2019-10-16 10:18:58 [runtime] (join_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX 2019-10-16 10:19:00 [runtime] (ready) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_FBPCA 2019-10-16 10:19:01 [runtime] (disabled) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_FBPCA 2019-10-16 10:19:01 [runtime] (ready) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CORRECT_CHEMISTRY_BATCH 2019-10-16 10:19:02 [runtime] (disabled) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CORRECT_CHEMISTRY_BATCH 2019-10-16 10:19:02 [runtime] (ready) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA 2019-10-16 10:19:02 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA.fork0.split 2019-10-16 10:19:02 [runtime] (ready) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS 2019-10-16 10:19:03 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS.fork0.split 2019-10-16 10:19:08 [runtime] (split_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA 2019-10-16 10:19:08 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA.fork0.chnk0.main 2019-10-16 10:19:10 [runtime] (split_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS 2019-10-16 10:19:11 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS.fork0.join 2019-10-16 10:19:15 [runtime] (join_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS 2019-10-16 10:19:23 [runtime] (chunks_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA 2019-10-16 10:19:24 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA.fork0.join 2019-10-16 10:19:41 [runtime] (join_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA 2019-10-16 10:19:42 [runtime] (chunks_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES 2019-10-16 10:19:43 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.join 2019-10-16 10:19:43 [runtime] (ready) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT 2019-10-16 10:19:44 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT.fork0.chnk0.main 2019-10-16 10:19:52 [runtime] (chunks_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT 2019-10-16 10:19:59 [runtime] (ready) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING 2019-10-16 10:19:59 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING.fork0.split 2019-10-16 10:19:59 [runtime] (ready) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE 2019-10-16 10:20:00 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE.fork0.split 2019-10-16 10:20:02 [runtime] (ready) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS 2019-10-16 10:20:03 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.split 2019-10-16 10:20:04 [runtime] (ready) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP 2019-10-16 10:20:05 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP.fork0.split 2019-10-16 10:20:08 [runtime] (split_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE 2019-10-16 10:20:09 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE.fork0.chnk0.main 2019-10-16 10:20:09 [runtime] (split_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING 2019-10-16 10:20:10 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING.fork0.chnk0.main 2019-10-16 10:20:13 [runtime] (split_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS 2019-10-16 10:20:14 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk0.main 2019-10-16 10:20:15 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk1.main 2019-10-16 10:20:17 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk2.main 2019-10-16 10:20:19 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk3.main 2019-10-16 10:20:20 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk4.main 2019-10-16 10:20:21 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk5.main 2019-10-16 10:20:22 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk6.main 2019-10-16 10:20:23 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk7.main 2019-10-16 10:20:24 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk8.main 2019-10-16 10:20:37 [runtime] (chunks_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING 2019-10-16 10:20:37 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING.fork0.join 2019-10-16 10:20:37 [runtime] (split_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP 2019-10-16 10:20:38 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP.fork0.chnk0.main 2019-10-16 10:20:42 [runtime] (chunks_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS 2019-10-16 10:20:42 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.join 2019-10-16 10:20:43 [runtime] (chunks_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE 2019-10-16 10:20:43 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE.fork0.join 2019-10-16 10:20:50 [runtime] (join_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE 2019-10-16 10:20:52 [runtime] (join_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING 2019-10-16 10:20:53 [runtime] (join_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS 2019-10-16 10:20:55 [runtime] (ready) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS 2019-10-16 10:20:55 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS.fork0.split 2019-10-16 10:20:59 [runtime] (split_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS 2019-10-16 10:20:59 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS.fork0.chnk0.main 2019-10-16 10:21:04 [runtime] (chunks_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS 2019-10-16 10:21:05 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS.fork0.join 2019-10-16 10:21:09 [runtime] (chunks_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP 2019-10-16 10:21:10 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP.fork0.join 2019-10-16 10:21:19 [runtime] (join_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS 2019-10-16 10:21:20 [runtime] (join_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP 2019-10-16 10:21:22 [runtime] (join_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES 2019-10-16 10:21:25 [runtime] (ready) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.COMBINE_CLUSTERING 2019-10-16 10:21:25 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.COMBINE_CLUSTERING.fork0.chnk0.main 2019-10-16 10:21:27 [runtime] (ready) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS 2019-10-16 10:21:27 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS.fork0.split 2019-10-16 10:21:32 [runtime] (split_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS 2019-10-16 10:21:33 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS.fork0.chnk0.main 2019-10-16 10:21:34 [runtime] (chunks_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.COMBINE_CLUSTERING 2019-10-16 10:21:36 [runtime] (ready) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION 2019-10-16 10:21:36 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.split 2019-10-16 10:21:40 [runtime] (split_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION 2019-10-16 10:21:41 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk00.main 2019-10-16 10:21:42 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk01.main 2019-10-16 10:21:42 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk02.main 2019-10-16 10:21:43 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk03.main 2019-10-16 10:21:44 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk04.main 2019-10-16 10:21:44 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk05.main 2019-10-16 10:21:45 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk06.main 2019-10-16 10:21:45 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk07.main 2019-10-16 10:21:46 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk08.main 2019-10-16 10:21:46 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk09.main 2019-10-16 10:23:22 [runtime] (chunks_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION 2019-10-16 10:23:23 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.join 2019-10-16 10:23:36 [runtime] (chunks_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS 2019-10-16 10:23:36 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS.fork0.join 2019-10-16 10:23:37 [runtime] (join_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION 2019-10-16 10:23:39 [runtime] (ready) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS 2019-10-16 10:23:39 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS.fork0.split 2019-10-16 10:23:42 [runtime] (join_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS 2019-10-16 10:23:44 [runtime] (ready) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS 2019-10-16 10:23:44 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS.fork0.split 2019-10-16 10:23:45 [runtime] (split_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS 2019-10-16 10:23:45 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS.fork0.chnk0.main 2019-10-16 10:23:49 [runtime] (split_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS 2019-10-16 10:23:50 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS.fork0.chnk0.main 2019-10-16 10:23:55 [runtime] (chunks_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS 2019-10-16 10:23:56 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS.fork0.join 2019-10-16 10:24:02 [runtime] (join_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS 2019-10-16 10:24:07 [runtime] (ready) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.CALL_PROTOSPACERS 2019-10-16 10:24:07 [runtime] (disabled) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.CALL_PROTOSPACERS 2019-10-16 10:24:08 [runtime] (chunks_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS 2019-10-16 10:24:08 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS.fork0.join 2019-10-16 10:24:09 [runtime] (ready) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET 2019-10-16 10:24:09 [runtime] (disabled) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET 2019-10-16 10:24:09 [runtime] (ready) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE 2019-10-16 10:24:09 [runtime] (disabled) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE 2019-10-16 10:24:10 [runtime] (ready) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS 2019-10-16 10:24:11 [runtime] (disabled) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS 2019-10-16 10:24:11 [runtime] (disabled) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER 2019-10-16 10:24:26 [runtime] (join_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS 2019-10-16 10:24:32 [runtime] (ready) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS 2019-10-16 10:24:34 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS.fork0.chnk0.main 2019-10-16 10:24:40 [runtime] (update) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 join_running 2019-10-16 10:24:44 [runtime] (chunks_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS 2019-10-16 10:24:51 [runtime] (ready) ID.Chow_1_Test.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS 2019-10-16 10:24:52 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS.fork0.split 2019-10-16 10:24:59 [runtime] (split_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS 2019-10-16 10:24:59 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS.fork0.chnk0.main 2019-10-16 10:25:17 [runtime] (chunks_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS 2019-10-16 10:25:18 [runtime] (run:local) ID.Chow_1_Test.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS.fork0.join 2019-10-16 10:25:23 [runtime] (join_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS 2019-10-16 10:30:41 [runtime] (update) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 join_running 2019-10-16 10:36:42 [runtime] (update) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 join_running 2019-10-16 10:37:16 [runtime] (join_complete) ID.Chow_1_Test.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS Outputs: - Run summary HTML: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/Chow1/Chow_1_Test/outs/web_summary.html - Run summary CSV: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/Chow1/Chow_1_Test/outs/metrics_summary.csv - BAM: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/Chow1/Chow_1_Test/outs/possorted_genome_bam.bam - BAM index: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/Chow1/Chow_1_Test/outs/possorted_genome_bam.bam.bai - Filtered feature-barcode matrices MEX: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/Chow1/Chow_1_Test/outs/filtered_feature_bc_matrix - Filtered feature-barcode matrices HDF5: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/Chow1/Chow_1_Test/outs/filtered_feature_bc_matrix.h5 - Unfiltered feature-barcode matrices MEX: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/Chow1/Chow_1_Test/outs/raw_feature_bc_matrix - Unfiltered feature-barcode matrices HDF5: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/Chow1/Chow_1_Test/outs/raw_feature_bc_matrix.h5 - Secondary analysis output CSV: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/Chow1/Chow_1_Test/outs/analysis - Per-molecule read information: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/Chow1/Chow_1_Test/outs/molecule_info.h5 - CRISPR-specific analysis: null - Loupe Cell Browser file: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/NASH/data/Chow1/Chow_1_Test/outs/cloupe.cloupe - Feature Reference: null Waiting 6 seconds for UI to do final refresh. Pipestance completed successfully! 2019-10-16 10:37:37 Shutting down. Saving pipestance info to "Chow_1_Test/Chow_1_Test.mri.tgz" Finished .............. Wed Oct 16 10:38:29 EDT 2019