Left reads: Input : 43251222 Mapped : 40223033 (93.0% of input) of these: 5193054 (12.9%) have multiple alignments (855291 have >20) Right reads: Input : 43251222 Mapped : 39898388 (92.2% of input) of these: 5154473 (12.9%) have multiple alignments (853823 have >20) 92.6% overall read mapping rate. Aligned pairs: 39580211 of these: 5108855 (12.9%) have multiple alignments 299543 ( 0.8%) are discordant alignments 90.8% concordant pair alignment rate.