## htsjdk.samtools.metrics.StringHeader
# picard.analysis.CollectRnaSeqMetrics REF_FLAT=genes_refFlat RIBOSOMAL_INTERVALS=rRNA_intervalList_sorted STRAND_SPECIFICITY=SECOND_READ_TRANSCRIPTION_STRAND INPUT=GSE98666_60D_hCITCO1_primary_unique.bam OUTPUT=CollectRnaSeqMetrics/GSE98666_60D_hCITCO1_metrics    MINIMUM_LENGTH=500 RRNA_FRAGMENT_PERCENTAGE=0.8 METRIC_ACCUMULATION_LEVEL=[ALL_READS] ASSUME_SORTED=true STOP_AFTER=0 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## htsjdk.samtools.metrics.StringHeader
# Started on: Thu Dec 06 10:44:30 EST 2018

## METRICS CLASS	picard.analysis.RnaSeqMetrics
PF_BASES	PF_ALIGNED_BASES	RIBOSOMAL_BASES	CODING_BASES	UTR_BASES	INTRONIC_BASES	INTERGENIC_BASES	IGNORED_READS	CORRECT_STRAND_READS	INCORRECT_STRAND_READS	PCT_RIBOSOMAL_BASES	PCT_CODING_BASES	PCT_UTR_BASES	PCT_INTRONIC_BASES	PCT_INTERGENIC_BASES	PCT_MRNA_BASES	PCT_USABLE_BASES	PCT_CORRECT_STRAND_READS	MEDIAN_CV_COVERAGE	MEDIAN_5PRIME_BIAS	MEDIAN_3PRIME_BIAS	MEDIAN_5PRIME_TO_3PRIME_BIAS	SAMPLE	LIBRARY	READ_GROUP
3488694700	3488631100	1899700	2223904727	795415730	209896324	257515388	0	58638336	156032	0.000545	0.637472	0.228002	0.060166	0.073816	0.865474	0.865458	0.997346	0.410317	0.490744	0.354291	1.473854			

## HISTOGRAM	java.lang.Integer
normalized_position	All_Reads.normalized_coverage
0	0.144499
1	0.276676
2	0.43918
3	0.538388
4	0.584611
5	0.647548
6	0.698935
7	0.750705
8	0.797898
9	0.84263
10	0.880235
11	0.912619
12	0.936801
13	0.951502
14	0.976007
15	1.002993
16	1.019881
17	1.03871
18	1.050607
19	1.063571
20	1.077838
21	1.092821
22	1.114353
23	1.124122
24	1.132624
25	1.146138
26	1.156126
27	1.159584
28	1.171417
29	1.179217
30	1.191695
31	1.208887
32	1.218102
33	1.217046
34	1.227478
35	1.237831
36	1.231317
37	1.23458
38	1.243772
39	1.25276
40	1.251796
41	1.256378
42	1.252682
43	1.242021
44	1.238797
45	1.246224
46	1.246786
47	1.235738
48	1.226965
49	1.21909
50	1.208756
51	1.20359
52	1.201689
53	1.20452
54	1.207334
55	1.201182
56	1.203372
57	1.200237
58	1.201122
59	1.199447
60	1.201414
61	1.202252
62	1.187024
63	1.181799
64	1.182898
65	1.166796
66	1.151444
67	1.138472
68	1.12955
69	1.117599
70	1.111419
71	1.11947
72	1.123338
73	1.115816
74	1.1028
75	1.08736
76	1.060683
77	1.038464
78	1.026246
79	1.021309
80	1.000995
81	0.986834
82	0.974953
83	0.961241
84	0.945204
85	0.924125
86	0.889358
87	0.855183
88	0.820088
89	0.780677
90	0.73921
91	0.691742
92	0.646179
93	0.607639
94	0.558779
95	0.49327
96	0.424171
97	0.344766
98	0.245523
99	0.134823
100	0.058735