## htsjdk.samtools.metrics.StringHeader
# picard.analysis.CollectRnaSeqMetrics REF_FLAT=genes_refFlat RIBOSOMAL_INTERVALS=rRNA_intervalList_sorted STRAND_SPECIFICITY=FIRST_READ_TRANSCRIPTION_STRAND INPUT=60D_hCITCO1_primary_unique.bam OUTPUT=CollectRnaSeqMetrics/60D_hCITCO1_metrics    MINIMUM_LENGTH=500 RRNA_FRAGMENT_PERCENTAGE=0.8 METRIC_ACCUMULATION_LEVEL=[ALL_READS] ASSUME_SORTED=true STOP_AFTER=0 VERBOSITY=INFO QUIET=false VALIDATION_STRINGENCY=STRICT COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## htsjdk.samtools.metrics.StringHeader
# Started on: Fri Apr 26 13:26:42 EDT 2019

## METRICS CLASS	picard.analysis.RnaSeqMetrics
PF_BASES	PF_ALIGNED_BASES	RIBOSOMAL_BASES	CODING_BASES	UTR_BASES	INTRONIC_BASES	INTERGENIC_BASES	IGNORED_READS	CORRECT_STRAND_READS	INCORRECT_STRAND_READS	PCT_RIBOSOMAL_BASES	PCT_CODING_BASES	PCT_UTR_BASES	PCT_INTRONIC_BASES	PCT_INTERGENIC_BASES	PCT_MRNA_BASES	PCT_USABLE_BASES	PCT_CORRECT_STRAND_READS	MEDIAN_CV_COVERAGE	MEDIAN_5PRIME_BIAS	MEDIAN_3PRIME_BIAS	MEDIAN_5PRIME_TO_3PRIME_BIAS	SAMPLE	LIBRARY	READ_GROUP
3488696600	3488633000	1899700	2223904881	795417511	209896039	257515638	0	156046	58638348	0.000545	0.637472	0.228003	0.060166	0.073816	0.865474	0.865459	0.002654	0.410317	0.490744	0.354291	1.473854			

## HISTOGRAM	java.lang.Integer
normalized_position	All_Reads.normalized_coverage
0	0.144499
1	0.276676
2	0.439181
3	0.538388
4	0.584611
5	0.647548
6	0.698936
7	0.750706
8	0.797899
9	0.842631
10	0.880235
11	0.912619
12	0.936801
13	0.951503
14	0.976007
15	1.002994
16	1.019881
17	1.038711
18	1.050607
19	1.063571
20	1.077839
21	1.092822
22	1.114353
23	1.124123
24	1.132625
25	1.146138
26	1.156127
27	1.159584
28	1.171417
29	1.179217
30	1.191696
31	1.208887
32	1.218103
33	1.217046
34	1.227479
35	1.237832
36	1.231317
37	1.23458
38	1.243773
39	1.25276
40	1.251796
41	1.256378
42	1.252683
43	1.242021
44	1.238798
45	1.246224
46	1.246786
47	1.235738
48	1.226966
49	1.21909
50	1.208756
51	1.203591
52	1.201689
53	1.20452
54	1.207334
55	1.201182
56	1.203372
57	1.200237
58	1.201123
59	1.199448
60	1.201415
61	1.202253
62	1.187025
63	1.181799
64	1.182898
65	1.166798
66	1.151446
67	1.138473
68	1.129549
69	1.117597
70	1.111421
71	1.11947
72	1.123335
73	1.115815
74	1.1028
75	1.087359
76	1.06068
77	1.038461
78	1.026248
79	1.021316
80	1.000997
81	0.986836
82	0.974956
83	0.961241
84	0.945205
85	0.924126
86	0.889358
87	0.855183
88	0.820089
89	0.780678
90	0.73921
91	0.69174
92	0.646172
93	0.607633
94	0.558778
95	0.493271
96	0.424172
97	0.344762
98	0.245516
99	0.134816
100	0.058735