Left reads: Input : 46569351 Mapped : 43460933 (93.3% of input) of these: 2511235 ( 5.8%) have multiple alignments (97397 have >20) Right reads: Input : 46569351 Mapped : 42931794 (92.2% of input) of these: 2479792 ( 5.8%) have multiple alignments (97418 have >20) 92.8% overall read mapping rate. Aligned pairs: 42458723 of these: 2442772 ( 5.8%) have multiple alignments 595771 ( 1.4%) are discordant alignments 89.9% concordant pair alignment rate.