========================================================== Starting on : Mon Nov 4 17:45:44 EST 2019 Running on node : scc-wk3 Current job ID : 304007 Current job name : TCPO_10X Task index number : ========================================================== /share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/bin cellranger count (3.1.0) Copyright (c) 2019 10x Genomics, Inc. All rights reserved. ------------------------------------------------------------------------------- Martian Runtime - '3.1.0-v3.2.3' Serving UI at http://scc-wk3:36943?auth=DzXOCnYcdFkgsGLR7gEmkmGb29sPQqkt4GHxFVhkJcs Running preflight checks (please wait)... 2019-11-04 17:45:50 [runtime] (ready) ID.10X_TCPO.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF 2019-11-04 17:45:50 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF.fork0.chnk0.main 2019-11-04 17:46:07 [runtime] (chunks_complete) ID.10X_TCPO.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF Checking sample info... Checking FASTQ folder... Checking libraries... Checking reference... Checking reference_path (/restricted/projectnb/waxmanlab/kkarri/tabula_muris/drop-seq/mm10_ref/updated-usethis-mm10plus-pcg-ercc-lnc-nodups) on scc-wk3... Checking chemistry... Checking optional arguments... mrc: '3.1.0-v3.2.3' mrp: '3.1.0-v3.2.3' Anaconda: Python 2.7.14 :: Anaconda, Inc. numpy: 1.14.2 scipy: 1.0.1 pysam: 0.14.1 h5py: 2.8.0 pandas: 0.22.0 STAR: STAR_2.5.1b samtools: samtools 1.7 Using htslib 1.7 Copyright (C) 2018 Genome Research Ltd. 2019-11-04 17:46:16 [runtime] (ready) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.DISABLE_FEATURE_STAGES 2019-11-04 17:46:16 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.DISABLE_FEATURE_STAGES.fork0.chnk0.main 2019-11-04 17:46:16 [runtime] (ready) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION 2019-11-04 17:46:17 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION.fork0.chnk0.main 2019-11-04 17:46:17 [runtime] (ready) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY 2019-11-04 17:46:18 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0.main 2019-11-04 17:46:19 [runtime] (chunks_complete) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.DISABLE_FEATURE_STAGES 2019-11-04 17:46:20 [runtime] (chunks_complete) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION 2019-11-04 17:46:23 [runtime] (progress) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0: Indexing genome... 2019-11-04 17:46:44 [runtime] (progress) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0: Building transcriptome... 2019-11-04 17:46:51 [runtime] (progress) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0: Building kmer index... 2019-11-04 17:47:39 [runtime] (progress) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0: Mapping reads... 2019-11-04 17:47:51 [runtime] (chunks_complete) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY 2019-11-04 17:47:52 [runtime] (ready) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS 2019-11-04 17:47:53 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS.fork0.chnk0.main 2019-11-04 17:47:56 [runtime] (chunks_complete) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS 2019-11-04 17:47:57 [runtime] (ready) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS 2019-11-04 17:47:57 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.split 2019-11-04 17:47:57 [runtime] (ready) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY 2019-11-04 17:47:57 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY.fork0.split 2019-11-04 17:47:59 [runtime] (split_complete) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS 2019-11-04 17:47:59 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.chnk0.main 2019-11-04 17:47:59 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.chnk1.main 2019-11-04 17:48:00 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.chnk2.main 2019-11-04 17:48:00 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.chnk3.main 2019-11-04 17:48:02 [runtime] (split_complete) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY 2019-11-04 17:48:08 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY.fork0.join 2019-11-04 17:48:30 [runtime] (join_complete) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY 2019-11-04 17:54:08 [runtime] (update) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0 chunks running (0/4 completed) 2019-11-04 17:54:55 [runtime] (chunks_complete) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS 2019-11-04 17:54:55 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.join 2019-11-04 17:54:56 [runtime] (join_complete) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS 2019-11-04 17:54:58 [runtime] (ready) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS 2019-11-04 17:54:58 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.split 2019-11-04 17:55:03 [runtime] (split_complete) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS 2019-11-04 17:55:09 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk00.main 2019-11-04 17:55:09 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk01.main 2019-11-04 17:55:10 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk02.main 2019-11-04 17:55:10 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk03.main 2019-11-04 17:55:10 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk04.main 2019-11-04 17:55:11 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk05.main 2019-11-04 17:55:11 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk06.main 2019-11-04 17:55:12 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk07.main 2019-11-04 17:55:12 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk08.main 2019-11-04 17:55:13 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk09.main 2019-11-04 17:55:13 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk10.main 2019-11-04 17:55:13 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk11.main 2019-11-04 17:55:14 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk12.main 2019-11-04 17:55:14 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk13.main 2019-11-04 17:55:15 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk14.main 2019-11-04 17:55:15 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk15.main 2019-11-04 17:55:16 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk16.main 2019-11-04 17:55:16 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk17.main 2019-11-04 17:55:17 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk18.main 2019-11-04 17:55:17 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk19.main 2019-11-04 17:55:18 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk20.main 2019-11-04 17:55:18 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk21.main 2019-11-04 17:55:19 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk22.main 2019-11-04 17:55:19 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk23.main 2019-11-04 17:55:20 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk24.main 2019-11-04 17:55:20 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk25.main 2019-11-04 17:55:20 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk26.main 2019-11-04 17:55:21 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk27.main 2019-11-04 17:55:21 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk28.main 2019-11-04 17:55:21 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk29.main 2019-11-04 17:55:22 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk30.main 2019-11-04 17:55:22 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk31.main 2019-11-04 17:55:22 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk32.main 2019-11-04 17:55:22 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk33.main 2019-11-04 17:55:23 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk34.main 2019-11-04 17:55:23 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk35.main 2019-11-04 17:55:23 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk36.main 2019-11-04 17:55:23 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk37.main 2019-11-04 17:55:24 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk38.main 2019-11-04 17:55:24 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk39.main 2019-11-04 17:55:24 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk40.main 2019-11-04 17:55:24 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk41.main 2019-11-04 17:55:24 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk42.main 2019-11-04 17:55:25 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk43.main 2019-11-04 17:55:25 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk44.main 2019-11-04 17:55:25 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk45.main 2019-11-04 17:55:25 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk46.main 2019-11-04 17:55:26 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk47.main 2019-11-04 17:55:26 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk48.main 2019-11-04 17:55:26 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk49.main 2019-11-04 17:55:26 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk50.main 2019-11-04 17:55:26 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk51.main 2019-11-04 17:55:27 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk52.main 2019-11-04 17:55:27 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk53.main 2019-11-04 17:55:27 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk54.main 2019-11-04 17:55:27 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk55.main 2019-11-04 17:55:28 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk56.main 2019-11-04 17:55:28 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk57.main 2019-11-04 18:01:12 [runtime] (update) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0 chunks running (0/58 completed) 2019-11-04 18:06:25 [runtime] (update) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0 chunks running (29/58 completed) 2019-11-04 18:11:07 [runtime] (chunks_complete) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS 2019-11-04 18:11:08 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.join 2019-11-04 18:12:39 [runtime] (join_complete) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS 2019-11-04 18:12:47 [runtime] (ready) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS 2019-11-04 18:12:48 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.split 2019-11-04 18:12:50 [runtime] (split_complete) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS 2019-11-04 18:12:54 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk00.main 2019-11-04 18:12:55 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk01.main 2019-11-04 18:12:55 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk02.main 2019-11-04 18:12:56 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk03.main 2019-11-04 18:12:56 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk04.main 2019-11-04 18:12:57 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk05.main 2019-11-04 18:12:57 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk06.main 2019-11-04 18:12:58 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk07.main 2019-11-04 18:12:59 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk08.main 2019-11-04 18:13:01 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk09.main 2019-11-04 18:13:03 [runtime] (run:local) 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ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk02.main 2019-11-04 18:47:15 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk03.main 2019-11-04 18:47:15 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk04.main 2019-11-04 18:47:16 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk05.main 2019-11-04 18:47:18 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk06.main 2019-11-04 18:47:18 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk07.main 2019-11-04 18:47:19 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk08.main 2019-11-04 18:47:20 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk09.main 2019-11-04 18:47:20 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk10.main 2019-11-04 18:47:21 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk11.main 2019-11-04 18:47:21 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk12.main 2019-11-04 18:47:21 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk13.main 2019-11-04 18:47:22 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk14.main 2019-11-04 18:47:22 [runtime] (run:local) 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ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk41.main 2019-11-04 18:47:34 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk42.main 2019-11-04 18:47:35 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk43.main 2019-11-04 18:47:35 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk44.main 2019-11-04 18:47:35 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk45.main 2019-11-04 18:47:35 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk46.main 2019-11-04 18:47:36 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk47.main 2019-11-04 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ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS 2019-11-04 19:00:57 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.join 2019-11-04 19:06:58 [runtime] (update) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0 join_running 2019-11-04 19:13:00 [runtime] (update) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0 join_running 2019-11-04 19:19:02 [runtime] (update) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0 join_running 2019-11-04 19:25:00 [runtime] (update) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0 join_running 2019-11-04 19:31:02 [runtime] (update) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0 join_running 2019-11-04 19:35:40 [runtime] (join_complete) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS 2019-11-04 19:35:54 [runtime] (ready) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC 2019-11-04 19:35:54 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.split 2019-11-04 19:36:04 [runtime] (split_complete) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC 2019-11-04 19:36:08 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk00.main 2019-11-04 19:36:08 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk01.main 2019-11-04 19:36:09 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk02.main 2019-11-04 19:36:09 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk03.main 2019-11-04 19:36:10 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk04.main 2019-11-04 19:36:10 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk05.main 2019-11-04 19:36:11 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk06.main 2019-11-04 19:36:11 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk07.main 2019-11-04 19:36:12 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk08.main 2019-11-04 19:36:12 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk09.main 2019-11-04 19:36:12 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk10.main 2019-11-04 19:36:13 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk11.main 2019-11-04 19:36:13 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk12.main 2019-11-04 19:36:14 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk13.main 2019-11-04 19:36:14 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk14.main 2019-11-04 19:36:14 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk15.main 2019-11-04 19:36:15 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk16.main 2019-11-04 19:36:15 [runtime] (run:local) 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ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk31.main 2019-11-04 19:36:18 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk32.main 2019-11-04 19:36:18 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk33.main 2019-11-04 19:36:18 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk34.main 2019-11-04 19:36:19 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk35.main 2019-11-04 19:36:19 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk36.main 2019-11-04 19:36:19 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk37.main 2019-11-04 19:36:19 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk38.main 2019-11-04 19:36:20 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk39.main 2019-11-04 19:36:20 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk40.main 2019-11-04 19:36:20 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk41.main 2019-11-04 19:36:20 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk42.main 2019-11-04 19:36:20 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk43.main 2019-11-04 19:36:21 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk44.main 2019-11-04 19:36:21 [runtime] (run:local) 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ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk52.main 2019-11-04 19:36:22 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk53.main 2019-11-04 19:36:23 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk54.main 2019-11-04 19:36:23 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk55.main 2019-11-04 19:36:23 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk56.main 2019-11-04 19:36:23 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.chnk57.main 2019-11-04 19:41:36 [runtime] (update) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0 chunks running (14/58 completed) 2019-11-04 19:46:37 [runtime] (update) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0 chunks running (43/58 completed) 2019-11-04 19:47:44 [runtime] (chunks_complete) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC 2019-11-04 19:47:45 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC.fork0.join 2019-11-04 19:47:48 [runtime] (join_complete) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.BUCKET_BY_BC 2019-11-04 19:48:00 [runtime] (ready) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC 2019-11-04 19:48:00 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.split 2019-11-04 19:48:02 [runtime] (split_complete) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC 2019-11-04 19:48:04 [runtime] (run:local) 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ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk14.main 2019-11-04 19:48:10 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk15.main 2019-11-04 19:48:10 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.chnk16.main 2019-11-04 19:53:17 [runtime] (update) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0 chunks running (2/17 completed) 2019-11-04 19:58:47 [runtime] (chunks_complete) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC 2019-11-04 19:58:47 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC.fork0.join 2019-11-04 20:02:58 [runtime] (join_complete) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_BC 2019-11-04 20:03:20 [runtime] (ready) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES 2019-11-04 20:03:20 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.split 2019-11-04 20:03:47 [runtime] (split_complete) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES 2019-11-04 20:03:51 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk00.main 2019-11-04 20:03:51 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk01.main 2019-11-04 20:03:52 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk02.main 2019-11-04 20:03:52 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk03.main 2019-11-04 20:03:52 [runtime] (run:local) 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ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.chnk53.main 2019-11-04 20:09:11 [runtime] (update) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0 chunks running (29/54 completed) 2019-11-04 20:09:14 [runtime] (chunks_complete) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES 2019-11-04 20:09:15 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.join 2019-11-04 20:09:38 [runtime] (join_complete) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES 2019-11-04 20:09:42 [runtime] (ready) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS 2019-11-04 20:09:42 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.split 2019-11-04 20:09:43 [runtime] (ready) 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ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk01.main 2019-11-04 20:53:35 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk02.main 2019-11-04 20:53:35 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk03.main 2019-11-04 20:53:36 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk04.main 2019-11-04 20:53:37 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk05.main 2019-11-04 20:53:37 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk06.main 2019-11-04 20:53:39 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk07.main 2019-11-04 20:53:40 [runtime] 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[runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk15.main 2019-11-04 20:53:45 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk16.main 2019-11-04 20:53:45 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk17.main 2019-11-04 20:53:46 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk18.main 2019-11-04 20:53:47 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk19.main 2019-11-04 20:53:47 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk20.main 2019-11-04 20:53:48 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk21.main 2019-11-04 20:53:48 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk22.main 2019-11-04 20:53:49 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk23.main 2019-11-04 20:53:50 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk24.main 2019-11-04 20:53:50 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk25.main 2019-11-04 20:53:51 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk26.main 2019-11-04 20:53:51 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk27.main 2019-11-04 20:53:51 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk28.main 2019-11-04 20:53:52 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk29.main 2019-11-04 20:53:52 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk30.main 2019-11-04 20:53:52 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk31.main 2019-11-04 20:53:53 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk32.main 2019-11-04 20:53:53 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk33.main 2019-11-04 20:53:54 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk34.main 2019-11-04 20:53:54 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk35.main 2019-11-04 20:53:54 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk36.main 2019-11-04 20:53:55 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk37.main 2019-11-04 20:53:55 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk38.main 2019-11-04 20:53:56 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk39.main 2019-11-04 20:53:56 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk40.main 2019-11-04 20:53:56 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk41.main 2019-11-04 20:53:57 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk42.main 2019-11-04 20:53:57 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk43.main 2019-11-04 20:53:57 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk44.main 2019-11-04 20:53:58 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk45.main 2019-11-04 20:53:59 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk46.main 2019-11-04 20:53:59 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk47.main 2019-11-04 20:54:00 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk48.main 2019-11-04 20:54:00 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk49.main 2019-11-04 20:54:01 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk50.main 2019-11-04 20:54:01 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk51.main 2019-11-04 20:54:02 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk52.main 2019-11-04 20:54:02 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk53.main 2019-11-04 20:54:05 [runtime] (chunks_complete) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT 2019-11-04 20:54:06 [runtime] (ready) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX 2019-11-04 20:54:07 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX.fork0.split 2019-11-04 20:56:14 [runtime] (update) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 join_running 2019-11-04 20:58:30 [runtime] (split_complete) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX 2019-11-04 20:58:30 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX.fork0.join 2019-11-04 20:58:49 [runtime] (join_complete) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX 2019-11-04 20:58:51 [runtime] (ready) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS 2019-11-04 20:58:51 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS.fork0.split 2019-11-04 20:58:51 [runtime] (ready) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_FBPCA 2019-11-04 20:58:52 [runtime] (disabled) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_FBPCA 2019-11-04 20:58:52 [runtime] (ready) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA 2019-11-04 20:58:52 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA.fork0.split 2019-11-04 20:58:54 [runtime] (ready) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CORRECT_CHEMISTRY_BATCH 2019-11-04 20:58:54 [runtime] (disabled) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CORRECT_CHEMISTRY_BATCH 2019-11-04 20:58:56 [runtime] (split_complete) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS 2019-11-04 20:58:57 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS.fork0.join 2019-11-04 20:58:57 [runtime] (split_complete) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA 2019-11-04 20:58:58 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA.fork0.chnk0.main 2019-11-04 20:59:01 [runtime] (join_complete) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS 2019-11-04 20:59:05 [runtime] (update) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0 chunks running (45/54 completed) 2019-11-04 20:59:32 [runtime] (chunks_complete) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA 2019-11-04 20:59:32 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA.fork0.join 2019-11-04 20:59:39 [runtime] (join_complete) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA 2019-11-04 20:59:40 [runtime] (ready) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT 2019-11-04 20:59:42 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT.fork0.chnk0.main 2019-11-04 20:59:47 [runtime] (chunks_complete) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT 2019-11-04 20:59:50 [runtime] (ready) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP 2019-11-04 20:59:50 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP.fork0.split 2019-11-04 20:59:51 [runtime] (ready) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS 2019-11-04 20:59:51 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.split 2019-11-04 20:59:53 [runtime] (ready) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING 2019-11-04 20:59:53 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING.fork0.split 2019-11-04 20:59:54 [runtime] (ready) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE 2019-11-04 20:59:54 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE.fork0.split 2019-11-04 20:59:56 [runtime] (split_complete) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS 2019-11-04 21:00:00 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk0.main 2019-11-04 21:00:01 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk1.main 2019-11-04 21:00:02 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk2.main 2019-11-04 21:00:02 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk3.main 2019-11-04 21:00:03 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk4.main 2019-11-04 21:00:04 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk5.main 2019-11-04 21:00:04 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk6.main 2019-11-04 21:00:04 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk7.main 2019-11-04 21:00:05 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk8.main 2019-11-04 21:00:12 [runtime] (split_complete) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING 2019-11-04 21:00:13 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING.fork0.chnk0.main 2019-11-04 21:00:13 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING.fork0.chnk1.main 2019-11-04 21:00:13 [runtime] (split_complete) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE 2019-11-04 21:00:13 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE.fork0.chnk0.main 2019-11-04 21:00:14 [runtime] (split_complete) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP 2019-11-04 21:00:14 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP.fork0.chnk0.main 2019-11-04 21:00:15 [runtime] (join_complete) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS 2019-11-04 21:00:26 [runtime] (chunks_complete) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS 2019-11-04 21:00:26 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.join 2019-11-04 21:00:27 [runtime] (chunks_complete) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING 2019-11-04 21:00:28 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING.fork0.join 2019-11-04 21:00:33 [runtime] (join_complete) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS 2019-11-04 21:00:38 [runtime] (chunks_complete) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES 2019-11-04 21:00:39 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.join 2019-11-04 21:01:02 [runtime] (join_complete) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING 2019-11-04 21:01:03 [runtime] (ready) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS 2019-11-04 21:01:03 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS.fork0.split 2019-11-04 21:01:06 [runtime] (split_complete) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS 2019-11-04 21:01:06 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS.fork0.chnk0.main 2019-11-04 21:01:08 [runtime] (chunks_complete) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS 2019-11-04 21:01:08 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS.fork0.join 2019-11-04 21:01:13 [runtime] (chunks_complete) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP 2019-11-04 21:01:14 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP.fork0.join 2019-11-04 21:01:18 [runtime] (join_complete) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP 2019-11-04 21:01:43 [runtime] (join_complete) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS 2019-11-04 21:01:44 [runtime] (ready) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.COMBINE_CLUSTERING 2019-11-04 21:01:45 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.COMBINE_CLUSTERING.fork0.chnk0.main 2019-11-04 21:01:49 [runtime] (chunks_complete) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.COMBINE_CLUSTERING 2019-11-04 21:01:50 [runtime] (ready) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION 2019-11-04 21:01:51 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.split 2019-11-04 21:01:53 [runtime] (split_complete) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION 2019-11-04 21:01:55 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk00.main 2019-11-04 21:01:55 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk01.main 2019-11-04 21:01:55 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk02.main 2019-11-04 21:01:56 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk03.main 2019-11-04 21:01:56 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk04.main 2019-11-04 21:01:56 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk05.main 2019-11-04 21:01:57 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk06.main 2019-11-04 21:01:57 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk07.main 2019-11-04 21:01:58 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk08.main 2019-11-04 21:01:58 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk09.main 2019-11-04 21:02:02 [runtime] (chunks_complete) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE 2019-11-04 21:02:03 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE.fork0.join 2019-11-04 21:02:49 [runtime] (join_complete) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE 2019-11-04 21:03:21 [runtime] (join_complete) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES 2019-11-04 21:03:26 [runtime] (ready) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS 2019-11-04 21:03:26 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS.fork0.split 2019-11-04 21:03:30 [runtime] (split_complete) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS 2019-11-04 21:03:31 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS.fork0.chnk0.main 2019-11-04 21:03:31 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS.fork0.chnk1.main 2019-11-04 21:05:35 [runtime] (chunks_complete) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION 2019-11-04 21:05:35 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.join 2019-11-04 21:05:45 [runtime] (join_complete) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION 2019-11-04 21:05:47 [runtime] (ready) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS 2019-11-04 21:05:47 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS.fork0.split 2019-11-04 21:05:49 [runtime] (split_complete) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS 2019-11-04 21:05:49 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS.fork0.chnk0.main 2019-11-04 21:06:02 [runtime] (chunks_complete) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS 2019-11-04 21:06:02 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS.fork0.join 2019-11-04 21:06:14 [runtime] (join_complete) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS 2019-11-04 21:06:28 [runtime] (chunks_complete) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS 2019-11-04 21:06:29 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS.fork0.join 2019-11-04 21:06:32 [runtime] (join_complete) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS 2019-11-04 21:06:32 [runtime] (ready) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS 2019-11-04 21:06:33 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS.fork0.split 2019-11-04 21:06:35 [runtime] (split_complete) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS 2019-11-04 21:06:36 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS.fork0.chnk0.main 2019-11-04 21:06:38 [runtime] (chunks_complete) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS 2019-11-04 21:06:38 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS.fork0.join 2019-11-04 21:06:41 [runtime] (join_complete) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS 2019-11-04 21:06:50 [runtime] (ready) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.CALL_PROTOSPACERS 2019-11-04 21:06:51 [runtime] (disabled) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.CALL_PROTOSPACERS 2019-11-04 21:06:51 [runtime] (ready) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET 2019-11-04 21:06:51 [runtime] (disabled) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET 2019-11-04 21:06:51 [runtime] (ready) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE 2019-11-04 21:06:51 [runtime] (disabled) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE 2019-11-04 21:06:51 [runtime] (ready) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS 2019-11-04 21:06:52 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS.fork0.chnk0.main 2019-11-04 21:06:52 [runtime] (ready) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS 2019-11-04 21:06:52 [runtime] (disabled) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS 2019-11-04 21:06:53 [runtime] (disabled) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER 2019-11-04 21:07:12 [runtime] (chunks_complete) ID.10X_TCPO.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS 2019-11-04 21:07:14 [runtime] (ready) ID.10X_TCPO.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS 2019-11-04 21:07:14 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS.fork0.split 2019-11-04 21:07:16 [runtime] (split_complete) ID.10X_TCPO.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS 2019-11-04 21:07:17 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS.fork0.chnk0.main 2019-11-04 21:07:54 [runtime] (chunks_complete) ID.10X_TCPO.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS 2019-11-04 21:07:55 [runtime] (run:local) ID.10X_TCPO.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS.fork0.join 2019-11-04 21:07:59 [runtime] (join_complete) ID.10X_TCPO.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS Outputs: - Run summary HTML: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G172/10X_TCPO/outs/web_summary.html - Run summary CSV: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G172/10X_TCPO/outs/metrics_summary.csv - BAM: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G172/10X_TCPO/outs/possorted_genome_bam.bam - BAM index: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G172/10X_TCPO/outs/possorted_genome_bam.bam.bai - Filtered feature-barcode matrices MEX: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G172/10X_TCPO/outs/filtered_feature_bc_matrix - Filtered feature-barcode matrices HDF5: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G172/10X_TCPO/outs/filtered_feature_bc_matrix.h5 - Unfiltered feature-barcode matrices MEX: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G172/10X_TCPO/outs/raw_feature_bc_matrix - Unfiltered feature-barcode matrices HDF5: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G172/10X_TCPO/outs/raw_feature_bc_matrix.h5 - Secondary analysis output CSV: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G172/10X_TCPO/outs/analysis - Per-molecule read information: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G172/10X_TCPO/outs/molecule_info.h5 - CRISPR-specific analysis: null - Loupe Cell Browser file: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G172/10X_TCPO/outs/cloupe.cloupe - Feature Reference: null Waiting 6 seconds for UI to do final refresh. Pipestance completed successfully! 2019-11-04 21:08:09 Shutting down. Saving pipestance info to "10X_TCPO/10X_TCPO.mri.tgz" Finished .............. Mon Nov 4 21:09:09 EST 2019