@include "_make_fastqs_stages.mro"

call MAKE_FASTQS_PREFLIGHT(
    run_path = "/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G172/BCL/",
    output_path = null,
    interop_output_path = null,
    barcode_whitelist = "/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/lib/python/cellranger/barcodes/737K-august-2016.txt,/share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/lib/python/cellranger/barcodes/3M-february-2018.txt.gz",
    check_executables = true,
    max_bcl2fastq_threads = 6,
)