### STAR --runMode genomeGenerate --runThreadN 1 --genomeDir /mnt/yard2/pat/cr/new-refs/reference_buildscripts2/mm10/star --genomeFastaFiles /mnt/yard2/pat/cr/new-refs/reference_buildscripts2/mm10/fasta/genome.fa --genomeSAindexNbases 14 --genomeChrBinNbits 18 --genomeSAsparseD 3 --limitGenomeGenerateRAM 17179869184 --sjdbGTFfile /mnt/yard2/pat/cr/new-refs/reference_buildscripts2/mm10/genes/genes.gtf versionGenome 20201 genomeFastaFiles /mnt/yard2/pat/cr/new-refs/reference_buildscripts2/mm10/fasta/genome.fa genomeSAindexNbases 14 genomeChrBinNbits 18 genomeSAsparseD 3 sjdbOverhang 100 sjdbFileChrStartEnd - sjdbGTFfile /mnt/yard2/pat/cr/new-refs/reference_buildscripts2/mm10/genes/genes.gtf sjdbGTFchrPrefix - sjdbGTFfeatureExon exon sjdbGTFtagExonParentTranscript transcript_id sjdbGTFtagExonParentGene gene_id sjdbInsertSave Basic