### STAR   --runMode genomeGenerate   --runThreadN 1   --genomeDir /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/ref/mm10_ensmbl/new_lncRNAs_reference/mm10Annot_premrna_PCG-newlncs_GeneBody_TACOTisha/star   --genomeFastaFiles /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/ref/mm10_ensmbl/new_lncRNAs_reference/mm10Annot_premrna_PCG-newlncs_GeneBody_TACOTisha/fasta/genome.fa      --genomeSAindexNbases 14   --genomeChrBinNbits 18   --genomeSAsparseD 3   --limitGenomeGenerateRAM 17179869184   --sjdbGTFfile /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/ref/mm10_ensmbl/new_lncRNAs_reference/mm10Annot_premrna_PCG-newlncs_GeneBody_TACOTisha/genes/genes.gtf
versionGenome	20201
genomeFastaFiles	/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/ref/mm10_ensmbl/new_lncRNAs_reference/mm10Annot_premrna_PCG-newlncs_GeneBody_TACOTisha/fasta/genome.fa 
genomeSAindexNbases	14
genomeChrBinNbits	18
genomeSAsparseD	3
sjdbOverhang	100
sjdbFileChrStartEnd	- 
sjdbGTFfile	/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/ref/mm10_ensmbl/new_lncRNAs_reference/mm10Annot_premrna_PCG-newlncs_GeneBody_TACOTisha/genes/genes.gtf
sjdbGTFchrPrefix	-
sjdbGTFfeatureExon	exon
sjdbGTFtagExonParentTranscript	transcript_id
sjdbGTFtagExonParentGene	gene_id
sjdbInsertSave	Basic