### STAR --runMode genomeGenerate --runThreadN 1 --genomeDir /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/ref/ERCC/mm10_ERCC_mcherry_dcas9_KRAB/star --genomeFastaFiles /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/ref/ERCC/mm10_ERCC_mcherry_dcas9_KRAB/fasta/genome.fa --genomeSAindexNbases 7 --genomeChrBinNbits 9 --genomeSAsparseD 1 --limitGenomeGenerateRAM 17179869184 --sjdbGTFfile /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/ref/ERCC/mm10_ERCC_mcherry_dcas9_KRAB/genes/genes.gtf versionGenome 20201 genomeFastaFiles /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/ref/ERCC/mm10_ERCC_mcherry_dcas9_KRAB/fasta/genome.fa genomeSAindexNbases 7 genomeChrBinNbits 9 genomeSAsparseD 1 sjdbOverhang 100 sjdbFileChrStartEnd - sjdbGTFfile /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/ref/ERCC/mm10_ERCC_mcherry_dcas9_KRAB/genes/genes.gtf sjdbGTFchrPrefix - sjdbGTFfeatureExon exon sjdbGTFtagExonParentTranscript transcript_id sjdbGTFtagExonParentGene gene_id sjdbInsertSave Basic