========================================================== Starting on : Tue Sep 17 15:39:51 EDT 2019 Running on node : scc-wk1 Current job ID : 9410761 Current job name : dropseq_10X_G171C_premRNA_mm10_ensembl_onlyPCG_transcript_UseThis Task index number : ========================================================== /share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/bin cellranger count (3.1.0) Copyright (c) 2019 10x Genomics, Inc. All rights reserved. ------------------------------------------------------------------------------- Martian Runtime - '3.1.0-v3.2.3' Serving UI at http://scc-wk1:33041?auth=sMOzW5BgIoVW7ZA-9SP0WTC3u6zJkcFlMgzk3_fBDBg Running preflight checks (please wait)... 2019-09-17 15:39:57 [runtime] (ready) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF 2019-09-17 15:39:58 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF.fork0.chnk0.main 2019-09-17 15:40:13 [runtime] (chunks_complete) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF Checking sample info... Checking FASTQ folder... Checking libraries... Checking reference... Checking reference_path (/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/ref/mm10_ensmbl/mm10_premrna_v1.0_ensembl_usethis) on scc-wk1... Checking chemistry... Checking optional arguments... mrc: '3.1.0-v3.2.3' mrp: '3.1.0-v3.2.3' Anaconda: Python 2.7.14 :: Anaconda, Inc. numpy: 1.14.2 scipy: 1.0.1 pysam: 0.14.1 h5py: 2.8.0 pandas: 0.22.0 STAR: STAR_2.5.1b samtools: samtools 1.7 Using htslib 1.7 Copyright (C) 2018 Genome Research Ltd. 2019-09-17 15:40:22 [runtime] (ready) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION 2019-09-17 15:40:23 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION.fork0.chnk0.main 2019-09-17 15:40:23 [runtime] (ready) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.DISABLE_FEATURE_STAGES 2019-09-17 15:40:24 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.DISABLE_FEATURE_STAGES.fork0.chnk0.main 2019-09-17 15:40:24 [runtime] (ready) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY 2019-09-17 15:40:25 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0.main 2019-09-17 15:40:25 [runtime] (chunks_complete) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION 2019-09-17 15:40:26 [runtime] (chunks_complete) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.DISABLE_FEATURE_STAGES 2019-09-17 15:40:30 [runtime] (progress) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0: Building transcriptome... 2019-09-17 15:41:37 [runtime] (progress) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0: Building kmer index... 2019-09-17 15:47:53 [runtime] (progress) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0: Mapping reads... 2019-09-17 15:48:14 [runtime] (chunks_complete) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY 2019-09-17 15:48:15 [runtime] (ready) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS 2019-09-17 15:48:16 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS.fork0.chnk0.main 2019-09-17 15:48:20 [runtime] (chunks_complete) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS 2019-09-17 15:48:21 [runtime] (ready) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY 2019-09-17 15:48:22 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY.fork0.split 2019-09-17 15:48:22 [runtime] (ready) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS 2019-09-17 15:48:22 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.split 2019-09-17 15:48:24 [runtime] (split_complete) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS 2019-09-17 15:48:24 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.chnk0.main 2019-09-17 15:48:24 [runtime] (split_complete) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY 2019-09-17 15:48:25 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY.fork0.join 2019-09-17 15:48:38 [runtime] (join_complete) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY 2019-09-17 15:54:29 [runtime] (update) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0 chunks_running 2019-09-17 16:00:34 [runtime] (update) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0 chunks_running 2019-09-17 16:06:36 [runtime] (update) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0 chunks_running 2019-09-17 16:09:12 [runtime] (chunks_complete) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS 2019-09-17 16:09:12 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.join 2019-09-17 16:09:14 [runtime] (join_complete) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS 2019-09-17 16:09:15 [runtime] (ready) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS 2019-09-17 16:09:16 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.split 2019-09-17 16:09:21 [runtime] (split_complete) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS 2019-09-17 16:09:25 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk00.main 2019-09-17 16:09:25 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk01.main 2019-09-17 16:09:25 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk02.main 2019-09-17 16:09:26 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk03.main 2019-09-17 16:09:26 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk04.main 2019-09-17 16:09:27 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk05.main 2019-09-17 16:09:28 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk06.main 2019-09-17 16:09:28 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk07.main 2019-09-17 16:09:29 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk08.main 2019-09-17 16:09:29 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk09.main 2019-09-17 16:09:30 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk10.main 2019-09-17 16:09:30 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk11.main 2019-09-17 16:09:31 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk12.main 2019-09-17 16:09:31 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk13.main 2019-09-17 16:09:32 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk14.main 2019-09-17 16:09:32 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk15.main 2019-09-17 16:09:33 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk16.main 2019-09-17 16:09:33 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk17.main 2019-09-17 16:09:33 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk18.main 2019-09-17 16:09:34 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk19.main 2019-09-17 16:09:34 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk20.main 2019-09-17 16:09:35 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk21.main 2019-09-17 16:09:35 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk22.main 2019-09-17 16:09:35 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk23.main 2019-09-17 16:09:36 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk24.main 2019-09-17 16:09:36 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk25.main 2019-09-17 16:09:37 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk26.main 2019-09-17 16:09:37 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk27.main 2019-09-17 16:09:39 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk28.main 2019-09-17 16:09:39 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk29.main 2019-09-17 16:09:40 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk30.main 2019-09-17 16:09:40 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk31.main 2019-09-17 16:09:40 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk32.main 2019-09-17 16:09:40 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk33.main 2019-09-17 16:09:41 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk34.main 2019-09-17 16:09:41 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk35.main 2019-09-17 16:09:41 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk36.main 2019-09-17 16:09:41 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk37.main 2019-09-17 16:09:41 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk38.main 2019-09-17 16:09:42 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk39.main 2019-09-17 16:09:42 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk40.main 2019-09-17 16:09:42 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk41.main 2019-09-17 16:09:42 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk42.main 2019-09-17 16:09:43 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk43.main 2019-09-17 16:09:43 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk44.main 2019-09-17 16:15:34 [runtime] (update) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0 chunks running (0/45 completed) 2019-09-17 16:21:10 [runtime] (update) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0 chunks running (28/45 completed) 2019-09-17 16:25:58 [runtime] (chunks_complete) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS 2019-09-17 16:25:58 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.join 2019-09-17 16:27:20 [runtime] (join_complete) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS 2019-09-17 16:27:29 [runtime] (ready) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS 2019-09-17 16:27:29 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.split 2019-09-17 16:27:32 [runtime] (split_complete) 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ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk20.main 2019-09-17 19:32:06 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk21.main 2019-09-17 19:32:07 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk22.main 2019-09-17 19:32:07 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk23.main 2019-09-17 19:32:08 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk24.main 2019-09-17 19:32:09 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk25.main 2019-09-17 19:32:11 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk26.main 2019-09-17 19:32:11 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk27.main 2019-09-17 19:32:12 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk28.main 2019-09-17 19:32:13 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk29.main 2019-09-17 19:32:13 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk30.main 2019-09-17 19:32:14 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk31.main 2019-09-17 19:32:14 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk32.main 2019-09-17 19:32:14 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk33.main 2019-09-17 19:32:15 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk34.main 2019-09-17 19:32:15 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk35.main 2019-09-17 19:32:16 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk36.main 2019-09-17 19:32:17 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk37.main 2019-09-17 19:32:17 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk38.main 2019-09-17 19:32:17 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk39.main 2019-09-17 19:32:18 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk40.main 2019-09-17 19:32:18 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk41.main 2019-09-17 19:32:19 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk42.main 2019-09-17 19:32:19 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk43.main 2019-09-17 19:32:20 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk44.main 2019-09-17 19:32:20 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk45.main 2019-09-17 19:32:20 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk46.main 2019-09-17 19:32:21 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk47.main 2019-09-17 19:32:21 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk48.main 2019-09-17 19:32:22 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk49.main 2019-09-17 19:32:22 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk50.main 2019-09-17 19:32:22 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk51.main 2019-09-17 19:32:23 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk52.main 2019-09-17 19:32:23 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk53.main 2019-09-17 19:32:28 [runtime] (chunks_complete) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT 2019-09-17 19:32:31 [runtime] (ready) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX 2019-09-17 19:32:31 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX.fork0.split 2019-09-17 19:35:51 [runtime] (update) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 join_running 2019-09-17 19:36:33 [runtime] (split_complete) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX 2019-09-17 19:36:33 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX.fork0.join 2019-09-17 19:36:42 [runtime] (join_complete) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX 2019-09-17 19:36:44 [runtime] (ready) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA 2019-09-17 19:36:44 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA.fork0.split 2019-09-17 19:36:45 [runtime] (ready) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_FBPCA 2019-09-17 19:36:45 [runtime] (disabled) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_FBPCA 2019-09-17 19:36:45 [runtime] (ready) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS 2019-09-17 19:36:45 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS.fork0.split 2019-09-17 19:36:47 [runtime] (ready) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CORRECT_CHEMISTRY_BATCH 2019-09-17 19:36:48 [runtime] (disabled) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CORRECT_CHEMISTRY_BATCH 2019-09-17 19:36:50 [runtime] (split_complete) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA 2019-09-17 19:36:51 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA.fork0.chnk0.main 2019-09-17 19:36:51 [runtime] (split_complete) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS 2019-09-17 19:36:52 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS.fork0.join 2019-09-17 19:36:56 [runtime] (join_complete) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS 2019-09-17 19:37:00 [runtime] (chunks_complete) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA 2019-09-17 19:37:01 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA.fork0.join 2019-09-17 19:37:06 [runtime] (join_complete) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA 2019-09-17 19:37:08 [runtime] (ready) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT 2019-09-17 19:37:09 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT.fork0.chnk0.main 2019-09-17 19:37:14 [runtime] (chunks_complete) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT 2019-09-17 19:37:16 [runtime] (ready) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING 2019-09-17 19:37:17 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING.fork0.split 2019-09-17 19:37:18 [runtime] (ready) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS 2019-09-17 19:37:19 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.split 2019-09-17 19:37:19 [runtime] (ready) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE 2019-09-17 19:37:19 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE.fork0.split 2019-09-17 19:37:19 [runtime] (ready) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP 2019-09-17 19:37:20 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP.fork0.split 2019-09-17 19:37:22 [runtime] (split_complete) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING 2019-09-17 19:37:23 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING.fork0.chnk0.main 2019-09-17 19:37:24 [runtime] (split_complete) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS 2019-09-17 19:37:25 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk0.main 2019-09-17 19:37:26 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk1.main 2019-09-17 19:37:27 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk2.main 2019-09-17 19:37:27 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk3.main 2019-09-17 19:37:28 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk4.main 2019-09-17 19:37:29 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk5.main 2019-09-17 19:37:29 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk6.main 2019-09-17 19:37:30 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk7.main 2019-09-17 19:37:31 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk8.main 2019-09-17 19:37:42 [runtime] (split_complete) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE 2019-09-17 19:37:42 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE.fork0.chnk0.main 2019-09-17 19:37:43 [runtime] (chunks_complete) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING 2019-09-17 19:37:43 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING.fork0.join 2019-09-17 19:37:45 [runtime] (chunks_complete) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS 2019-09-17 19:37:46 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.join 2019-09-17 19:37:46 [runtime] (split_complete) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP 2019-09-17 19:37:47 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP.fork0.chnk0.main 2019-09-17 19:37:53 [runtime] (chunks_complete) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE 2019-09-17 19:37:53 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE.fork0.join 2019-09-17 19:37:54 [runtime] (join_complete) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING 2019-09-17 19:37:55 [runtime] (join_complete) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS 2019-09-17 19:38:03 [runtime] (update) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0 chunks running (47/54 completed) 2019-09-17 19:38:03 [runtime] (join_complete) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE 2019-09-17 19:38:04 [runtime] (ready) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS 2019-09-17 19:38:04 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS.fork0.split 2019-09-17 19:38:05 [runtime] (chunks_complete) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP 2019-09-17 19:38:05 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP.fork0.join 2019-09-17 19:38:09 [runtime] (split_complete) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS 2019-09-17 19:38:10 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS.fork0.chnk0.main 2019-09-17 19:38:14 [runtime] (join_complete) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP 2019-09-17 19:38:15 [runtime] (chunks_complete) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS 2019-09-17 19:38:16 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS.fork0.join 2019-09-17 19:38:23 [runtime] (chunks_complete) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES 2019-09-17 19:38:24 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.join 2019-09-17 19:38:29 [runtime] (join_complete) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS 2019-09-17 19:38:30 [runtime] (ready) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.COMBINE_CLUSTERING 2019-09-17 19:38:30 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.COMBINE_CLUSTERING.fork0.chnk0.main 2019-09-17 19:38:42 [runtime] (chunks_complete) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.COMBINE_CLUSTERING 2019-09-17 19:38:44 [runtime] (ready) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION 2019-09-17 19:38:45 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.split 2019-09-17 19:38:48 [runtime] (split_complete) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION 2019-09-17 19:38:49 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk00.main 2019-09-17 19:38:50 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk01.main 2019-09-17 19:38:51 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk02.main 2019-09-17 19:38:51 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk03.main 2019-09-17 19:38:51 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk04.main 2019-09-17 19:38:52 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk05.main 2019-09-17 19:38:53 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk06.main 2019-09-17 19:38:53 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk07.main 2019-09-17 19:38:54 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk08.main 2019-09-17 19:38:54 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk09.main 2019-09-17 19:40:25 [runtime] (chunks_complete) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION 2019-09-17 19:40:26 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.join 2019-09-17 19:40:38 [runtime] (join_complete) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION 2019-09-17 19:40:43 [runtime] (join_complete) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES 2019-09-17 19:40:47 [runtime] (ready) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS 2019-09-17 19:40:47 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS.fork0.split 2019-09-17 19:40:48 [runtime] (ready) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS 2019-09-17 19:40:48 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS.fork0.split 2019-09-17 19:40:50 [runtime] (split_complete) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS 2019-09-17 19:40:51 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS.fork0.chnk0.main 2019-09-17 19:40:54 [runtime] (split_complete) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS 2019-09-17 19:40:55 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS.fork0.chnk0.main 2019-09-17 19:41:07 [runtime] (chunks_complete) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS 2019-09-17 19:41:07 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS.fork0.join 2019-09-17 19:41:23 [runtime] (join_complete) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS 2019-09-17 19:41:50 [runtime] (update) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 join_running 2019-09-17 19:44:51 [runtime] (chunks_complete) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS 2019-09-17 19:44:52 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS.fork0.join 2019-09-17 19:44:56 [runtime] (join_complete) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS 2019-09-17 19:44:57 [runtime] (ready) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS 2019-09-17 19:44:58 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS.fork0.split 2019-09-17 19:45:02 [runtime] (split_complete) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS 2019-09-17 19:45:02 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS.fork0.chnk0.main 2019-09-17 19:45:06 [runtime] (chunks_complete) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS 2019-09-17 19:45:06 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS.fork0.join 2019-09-17 19:45:10 [runtime] (join_complete) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS 2019-09-17 19:45:19 [runtime] (ready) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.CALL_PROTOSPACERS 2019-09-17 19:45:20 [runtime] (disabled) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.CALL_PROTOSPACERS 2019-09-17 19:45:20 [runtime] (ready) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET 2019-09-17 19:45:21 [runtime] (disabled) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET 2019-09-17 19:45:21 [runtime] (ready) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE 2019-09-17 19:45:21 [runtime] (disabled) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE 2019-09-17 19:45:21 [runtime] (ready) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS 2019-09-17 19:45:22 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS.fork0.chnk0.main 2019-09-17 19:45:23 [runtime] (ready) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS 2019-09-17 19:45:23 [runtime] (disabled) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS 2019-09-17 19:45:24 [runtime] (disabled) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER 2019-09-17 19:45:43 [runtime] (chunks_complete) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS 2019-09-17 19:45:48 [runtime] (ready) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS 2019-09-17 19:45:49 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS.fork0.split 2019-09-17 19:45:52 [runtime] (split_complete) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS 2019-09-17 19:45:53 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS.fork0.chnk0.main 2019-09-17 19:46:06 [runtime] (chunks_complete) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS 2019-09-17 19:46:06 [runtime] (run:local) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS.fork0.join 2019-09-17 19:46:10 [runtime] (join_complete) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS 2019-09-17 19:47:50 [runtime] (update) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 join_running 2019-09-17 19:52:15 [runtime] (join_complete) ID.10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS Outputs: - Run summary HTML: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis/outs/web_summary.html - Run summary CSV: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis/outs/metrics_summary.csv - BAM: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis/outs/possorted_genome_bam.bam - BAM index: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis/outs/possorted_genome_bam.bam.bai - Filtered feature-barcode matrices MEX: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis/outs/filtered_feature_bc_matrix - Filtered feature-barcode matrices HDF5: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis/outs/filtered_feature_bc_matrix.h5 - Unfiltered feature-barcode matrices MEX: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis/outs/raw_feature_bc_matrix - Unfiltered feature-barcode matrices HDF5: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis/outs/raw_feature_bc_matrix.h5 - Secondary analysis output CSV: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis/outs/analysis - Per-molecule read information: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis/outs/molecule_info.h5 - CRISPR-specific analysis: null - Loupe Cell Browser file: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis/outs/cloupe.cloupe - Feature Reference: null Waiting 6 seconds for UI to do final refresh. Pipestance completed successfully! 2019-09-17 19:52:40 Shutting down. Saving pipestance info to "10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis/10X_G171C_mm9_premRNA_ensembl_onlyPCG_transcript_UseThis.mri.tgz" Finished .............. Tue Sep 17 19:53:49 EDT 2019