========================================================== Starting on : Tue Sep 17 19:55:12 EDT 2019 Running on node : scc-wk1 Current job ID : 9415051 Current job name : dropseq_10X_G171C_premRNA_mm10_ensembl_onlyPCG_gene_UseThis Task index number : ========================================================== /share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/bin cellranger count (3.1.0) Copyright (c) 2019 10x Genomics, Inc. All rights reserved. ------------------------------------------------------------------------------- Martian Runtime - '3.1.0-v3.2.3' Serving UI at http://scc-wk1:35936?auth=U6-Kz_yUqpSSaEWd0KMBKuv0xDLaVyqWlKIX0tG5EbA Running preflight checks (please wait)... 2019-09-17 19:55:14 [runtime] (ready) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF 2019-09-17 19:55:15 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF.fork0.chnk0.main 2019-09-17 19:55:18 [runtime] (chunks_complete) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF Checking sample info... Checking FASTQ folder... Checking libraries... Checking reference... Checking reference_path (/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/ref/mm10_ensmbl/mm10_premrna_v1.1_ensembl_usethis) on scc-wk1... Checking chemistry... Checking optional arguments... mrc: '3.1.0-v3.2.3' mrp: '3.1.0-v3.2.3' Anaconda: Python 2.7.14 :: Anaconda, Inc. numpy: 1.14.2 scipy: 1.0.1 pysam: 0.14.1 h5py: 2.8.0 pandas: 0.22.0 STAR: STAR_2.5.1b samtools: samtools 1.7 Using htslib 1.7 Copyright (C) 2018 Genome Research Ltd. 2019-09-17 19:55:26 [runtime] (ready) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY 2019-09-17 19:55:28 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0.main 2019-09-17 19:55:28 [runtime] (ready) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.DISABLE_FEATURE_STAGES 2019-09-17 19:55:29 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.DISABLE_FEATURE_STAGES.fork0.chnk0.main 2019-09-17 19:55:31 [runtime] (ready) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION 2019-09-17 19:55:32 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION.fork0.chnk0.main 2019-09-17 19:55:33 [runtime] (progress) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0: Building transcriptome... 2019-09-17 19:55:34 [runtime] (chunks_complete) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.DISABLE_FEATURE_STAGES 2019-09-17 19:55:38 [runtime] (chunks_complete) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION 2019-09-17 19:57:10 [runtime] (progress) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0: Building kmer index... 2019-09-17 20:03:33 [runtime] (update) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0 chunks_running 2019-09-17 20:03:59 [runtime] (progress) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0: Mapping reads... 2019-09-17 20:04:26 [runtime] (chunks_complete) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY 2019-09-17 20:04:27 [runtime] (ready) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS 2019-09-17 20:04:28 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS.fork0.chnk0.main 2019-09-17 20:04:30 [runtime] (chunks_complete) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS 2019-09-17 20:04:31 [runtime] (ready) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS 2019-09-17 20:04:32 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.split 2019-09-17 20:04:32 [runtime] (ready) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY 2019-09-17 20:04:32 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY.fork0.split 2019-09-17 20:04:34 [runtime] (split_complete) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS 2019-09-17 20:04:34 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.chnk0.main 2019-09-17 20:04:35 [runtime] (split_complete) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY 2019-09-17 20:04:35 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY.fork0.join 2019-09-17 20:04:41 [runtime] (join_complete) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY 2019-09-17 20:10:39 [runtime] (update) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0 chunks_running 2019-09-17 20:16:42 [runtime] (update) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0 chunks_running 2019-09-17 20:22:47 [runtime] (update) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0 chunks_running 2019-09-17 20:28:48 [runtime] (update) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0 chunks_running 2019-09-17 20:28:56 [runtime] (chunks_complete) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS 2019-09-17 20:28:56 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.join 2019-09-17 20:28:58 [runtime] (join_complete) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS 2019-09-17 20:28:59 [runtime] (ready) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS 2019-09-17 20:29:00 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.split 2019-09-17 20:29:04 [runtime] (split_complete) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS 2019-09-17 20:29:08 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk00.main 2019-09-17 20:29:09 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk01.main 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ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk33.main 2019-09-17 23:50:06 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk34.main 2019-09-17 23:50:07 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk35.main 2019-09-17 23:50:07 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk36.main 2019-09-17 23:50:07 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk37.main 2019-09-17 23:50:08 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk38.main 2019-09-17 23:50:08 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk39.main 2019-09-17 23:50:09 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk40.main 2019-09-17 23:50:09 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk41.main 2019-09-17 23:50:09 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk42.main 2019-09-17 23:50:10 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk43.main 2019-09-17 23:50:10 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk44.main 2019-09-17 23:50:10 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk45.main 2019-09-17 23:50:11 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk46.main 2019-09-17 23:50:11 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk47.main 2019-09-17 23:50:12 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk48.main 2019-09-17 23:50:12 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk49.main 2019-09-17 23:50:14 [runtime] (update) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 join_running 2019-09-17 23:50:14 [runtime] (chunks_complete) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT 2019-09-17 23:50:15 [runtime] (ready) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX 2019-09-17 23:50:15 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX.fork0.split 2019-09-17 23:54:17 [runtime] (split_complete) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX 2019-09-17 23:54:17 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX.fork0.join 2019-09-17 23:54:26 [runtime] (join_complete) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX 2019-09-17 23:54:28 [runtime] (ready) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA 2019-09-17 23:54:28 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA.fork0.split 2019-09-17 23:54:28 [runtime] (ready) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_FBPCA 2019-09-17 23:54:28 [runtime] (disabled) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_FBPCA 2019-09-17 23:54:28 [runtime] (ready) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS 2019-09-17 23:54:28 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS.fork0.split 2019-09-17 23:54:30 [runtime] (ready) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CORRECT_CHEMISTRY_BATCH 2019-09-17 23:54:30 [runtime] (disabled) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CORRECT_CHEMISTRY_BATCH 2019-09-17 23:54:31 [runtime] (split_complete) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA 2019-09-17 23:54:32 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA.fork0.chnk0.main 2019-09-17 23:54:32 [runtime] (split_complete) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS 2019-09-17 23:54:33 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS.fork0.join 2019-09-17 23:54:36 [runtime] (join_complete) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS 2019-09-17 23:54:40 [runtime] (chunks_complete) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA 2019-09-17 23:54:41 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA.fork0.join 2019-09-17 23:54:45 [runtime] (join_complete) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA 2019-09-17 23:54:46 [runtime] (ready) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT 2019-09-17 23:54:47 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT.fork0.chnk0.main 2019-09-17 23:54:51 [runtime] (chunks_complete) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT 2019-09-17 23:54:55 [runtime] (ready) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE 2019-09-17 23:54:55 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE.fork0.split 2019-09-17 23:54:56 [runtime] (ready) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS 2019-09-17 23:54:56 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.split 2019-09-17 23:54:56 [runtime] (ready) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING 2019-09-17 23:54:57 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING.fork0.split 2019-09-17 23:54:57 [runtime] (ready) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP 2019-09-17 23:54:57 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP.fork0.split 2019-09-17 23:55:02 [runtime] (split_complete) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE 2019-09-17 23:55:02 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE.fork0.chnk0.main 2019-09-17 23:55:02 [runtime] (split_complete) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS 2019-09-17 23:55:04 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk0.main 2019-09-17 23:55:04 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk1.main 2019-09-17 23:55:05 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk2.main 2019-09-17 23:55:05 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk3.main 2019-09-17 23:55:06 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk4.main 2019-09-17 23:55:06 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk5.main 2019-09-17 23:55:07 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk6.main 2019-09-17 23:55:08 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk7.main 2019-09-17 23:55:09 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk8.main 2019-09-17 23:55:17 [runtime] (split_complete) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP 2019-09-17 23:55:17 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP.fork0.chnk0.main 2019-09-17 23:55:17 [runtime] (split_complete) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING 2019-09-17 23:55:18 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING.fork0.chnk0.main 2019-09-17 23:55:20 [runtime] (chunks_complete) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE 2019-09-17 23:55:20 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE.fork0.join 2019-09-17 23:55:21 [runtime] (chunks_complete) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS 2019-09-17 23:55:21 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.join 2019-09-17 23:55:24 [runtime] (chunks_complete) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING 2019-09-17 23:55:25 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING.fork0.join 2019-09-17 23:55:27 [runtime] (join_complete) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE 2019-09-17 23:55:29 [runtime] (join_complete) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS 2019-09-17 23:55:31 [runtime] (chunks_complete) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP 2019-09-17 23:55:32 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP.fork0.join 2019-09-17 23:55:33 [runtime] (join_complete) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING 2019-09-17 23:55:34 [runtime] (ready) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS 2019-09-17 23:55:35 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS.fork0.split 2019-09-17 23:55:38 [runtime] (join_complete) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP 2019-09-17 23:55:39 [runtime] (split_complete) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS 2019-09-17 23:55:39 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS.fork0.chnk0.main 2019-09-17 23:55:42 [runtime] (chunks_complete) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS 2019-09-17 23:55:43 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS.fork0.join 2019-09-17 23:55:49 [runtime] (update) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0 chunks running (47/50 completed) 2019-09-17 23:55:55 [runtime] (join_complete) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS 2019-09-17 23:55:56 [runtime] (ready) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.COMBINE_CLUSTERING 2019-09-17 23:55:56 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.COMBINE_CLUSTERING.fork0.chnk0.main 2019-09-17 23:56:01 [runtime] (update) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 join_running 2019-09-17 23:56:01 [runtime] (chunks_complete) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.COMBINE_CLUSTERING 2019-09-17 23:56:04 [runtime] (ready) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION 2019-09-17 23:56:04 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.split 2019-09-17 23:56:04 [runtime] (chunks_complete) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES 2019-09-17 23:56:05 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.join 2019-09-17 23:56:08 [runtime] (split_complete) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION 2019-09-17 23:56:10 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk00.main 2019-09-17 23:56:10 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk01.main 2019-09-17 23:56:11 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk02.main 2019-09-17 23:56:11 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk03.main 2019-09-17 23:56:12 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk04.main 2019-09-17 23:56:13 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk05.main 2019-09-17 23:56:13 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk06.main 2019-09-17 23:56:14 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk07.main 2019-09-17 23:56:14 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk08.main 2019-09-17 23:56:15 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk09.main 2019-09-17 23:57:39 [runtime] (chunks_complete) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION 2019-09-17 23:57:40 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.join 2019-09-17 23:57:50 [runtime] (join_complete) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION 2019-09-17 23:57:53 [runtime] (ready) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS 2019-09-17 23:57:54 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS.fork0.split 2019-09-17 23:57:57 [runtime] (split_complete) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS 2019-09-17 23:57:58 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS.fork0.chnk0.main 2019-09-17 23:58:12 [runtime] (chunks_complete) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS 2019-09-17 23:58:12 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS.fork0.join 2019-09-17 23:58:15 [runtime] (join_complete) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES 2019-09-17 23:58:20 [runtime] (ready) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS 2019-09-17 23:58:20 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS.fork0.split 2019-09-17 23:58:27 [runtime] (split_complete) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS 2019-09-17 23:58:27 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS.fork0.chnk0.main 2019-09-17 23:58:27 [runtime] (join_complete) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS 2019-09-18 00:01:47 [runtime] (chunks_complete) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS 2019-09-18 00:01:47 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS.fork0.join 2019-09-18 00:01:51 [runtime] (join_complete) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS 2019-09-18 00:01:52 [runtime] (ready) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS 2019-09-18 00:01:52 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS.fork0.split 2019-09-18 00:01:57 [runtime] (split_complete) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS 2019-09-18 00:01:57 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS.fork0.chnk0.main 2019-09-18 00:02:01 [runtime] (chunks_complete) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS 2019-09-18 00:02:01 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS.fork0.join 2019-09-18 00:02:05 [runtime] (update) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 join_running 2019-09-18 00:02:05 [runtime] (join_complete) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS 2019-09-18 00:02:09 [runtime] (ready) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.CALL_PROTOSPACERS 2019-09-18 00:02:10 [runtime] (disabled) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.CALL_PROTOSPACERS 2019-09-18 00:02:10 [runtime] (ready) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET 2019-09-18 00:02:10 [runtime] (disabled) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET 2019-09-18 00:02:11 [runtime] (ready) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS 2019-09-18 00:02:11 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS.fork0.chnk0.main 2019-09-18 00:02:12 [runtime] (ready) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE 2019-09-18 00:02:12 [runtime] (disabled) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE 2019-09-18 00:02:12 [runtime] (ready) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS 2019-09-18 00:02:13 [runtime] (disabled) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS 2019-09-18 00:02:13 [runtime] (disabled) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER 2019-09-18 00:02:29 [runtime] (chunks_complete) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS 2019-09-18 00:02:33 [runtime] (ready) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS 2019-09-18 00:02:33 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS.fork0.split 2019-09-18 00:02:36 [runtime] (split_complete) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS 2019-09-18 00:02:36 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS.fork0.chnk0.main 2019-09-18 00:02:49 [runtime] (chunks_complete) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS 2019-09-18 00:02:49 [runtime] (run:local) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS.fork0.join 2019-09-18 00:02:55 [runtime] (join_complete) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS 2019-09-18 00:08:05 [runtime] (update) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 join_running 2019-09-18 00:10:09 [runtime] (join_complete) ID.10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS Outputs: - Run summary HTML: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis/outs/web_summary.html - Run summary CSV: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis/outs/metrics_summary.csv - BAM: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis/outs/possorted_genome_bam.bam - BAM index: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis/outs/possorted_genome_bam.bam.bai - Filtered feature-barcode matrices MEX: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis/outs/filtered_feature_bc_matrix - Filtered feature-barcode matrices HDF5: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis/outs/filtered_feature_bc_matrix.h5 - Unfiltered feature-barcode matrices MEX: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis/outs/raw_feature_bc_matrix - Unfiltered feature-barcode matrices HDF5: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis/outs/raw_feature_bc_matrix.h5 - Secondary analysis output CSV: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis/outs/analysis - Per-molecule read information: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis/outs/molecule_info.h5 - CRISPR-specific analysis: null - Loupe Cell Browser file: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis/outs/cloupe.cloupe - Feature Reference: null Waiting 6 seconds for UI to do final refresh. Pipestance completed successfully! 2019-09-18 00:10:28 Shutting down. Saving pipestance info to "10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis/10X_G171C_mm10_premRNA_ensembl_onlyPCG_gene_UseThis.mri.tgz" Finished .............. Wed Sep 18 00:11:21 EDT 2019