========================================================== Starting on : Sat Sep 7 18:15:39 EDT 2019 Running on node : scc-wj1 Current job ID : 9189733 Current job name : dropseq_10X_G171C_mm9_default_omp28 Task index number : ========================================================== /share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/bin cellranger count (3.1.0) Copyright (c) 2019 10x Genomics, Inc. All rights reserved. ------------------------------------------------------------------------------- Martian Runtime - '3.1.0-v3.2.3' Serving UI at http://scc-wj1:38551?auth=Yt0b_YAARsXTB5LF2YGVBaEAn3SGPAFfO2wepOwln98 Running preflight checks (please wait)... 2019-09-07 18:15:41 [runtime] (ready) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF 2019-09-07 18:15:41 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF.fork0.chnk0.main 2019-09-07 18:15:44 [runtime] (chunks_complete) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF Checking sample info... Checking FASTQ folder... Checking libraries... Checking reference... Checking reference_path (/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/ref/mm9/mm9_usethis) on scc-wj1... Checking chemistry... Checking optional arguments... mrc: '3.1.0-v3.2.3' mrp: '3.1.0-v3.2.3' Anaconda: Python 2.7.14 :: Anaconda, Inc. numpy: 1.14.2 scipy: 1.0.1 pysam: 0.14.1 h5py: 2.8.0 pandas: 0.22.0 STAR: STAR_2.5.1b samtools: samtools 1.7 Using htslib 1.7 Copyright (C) 2018 Genome Research Ltd. 2019-09-07 18:15:52 [runtime] (ready) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.DISABLE_FEATURE_STAGES 2019-09-07 18:15:53 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.DISABLE_FEATURE_STAGES.fork0.chnk0.main 2019-09-07 18:15:54 [runtime] (ready) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION 2019-09-07 18:15:54 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION.fork0.chnk0.main 2019-09-07 18:15:55 [runtime] (ready) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY 2019-09-07 18:15:56 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0.main 2019-09-07 18:15:56 [runtime] (chunks_complete) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.DISABLE_FEATURE_STAGES 2019-09-07 18:15:58 [runtime] (chunks_complete) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION 2019-09-07 18:16:02 [runtime] (progress) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0: Building transcriptome... 2019-09-07 18:16:06 [runtime] (progress) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0: Building kmer index... 2019-09-07 18:17:47 [runtime] (progress) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0: Mapping reads... 2019-09-07 18:17:59 [runtime] (chunks_complete) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY 2019-09-07 18:18:00 [runtime] (ready) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS 2019-09-07 18:18:01 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS.fork0.chnk0.main 2019-09-07 18:18:05 [runtime] (chunks_complete) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS 2019-09-07 18:18:07 [runtime] (ready) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS 2019-09-07 18:18:07 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.split 2019-09-07 18:18:07 [runtime] (ready) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY 2019-09-07 18:18:07 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY.fork0.split 2019-09-07 18:18:10 [runtime] (split_complete) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS 2019-09-07 18:18:11 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.chnk0.main 2019-09-07 18:18:11 [runtime] (split_complete) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY 2019-09-07 18:18:12 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY.fork0.join 2019-09-07 18:18:20 [runtime] (join_complete) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY 2019-09-07 18:24:18 [runtime] (update) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0 chunks_running 2019-09-07 18:30:19 [runtime] (update) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0 chunks_running 2019-09-07 18:36:24 [runtime] (update) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0 chunks_running 2019-09-07 18:42:26 [runtime] (update) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0 chunks_running 2019-09-07 18:44:16 [runtime] (chunks_complete) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS 2019-09-07 18:44:16 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.join 2019-09-07 18:44:18 [runtime] (join_complete) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS 2019-09-07 18:44:19 [runtime] (ready) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS 2019-09-07 18:44:20 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.split 2019-09-07 18:44:25 [runtime] (split_complete) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS 2019-09-07 18:44:32 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk00.main 2019-09-07 18:44:33 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk01.main 2019-09-07 18:44:33 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk02.main 2019-09-07 18:44:33 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk03.main 2019-09-07 18:44:34 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk04.main 2019-09-07 18:44:34 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk05.main 2019-09-07 18:44:35 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk06.main 2019-09-07 18:44:35 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk07.main 2019-09-07 18:44:36 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk08.main 2019-09-07 18:44:36 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk09.main 2019-09-07 18:44:37 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk10.main 2019-09-07 18:44:37 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk11.main 2019-09-07 18:44:38 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk12.main 2019-09-07 18:44:41 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk13.main 2019-09-07 18:44:41 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk14.main 2019-09-07 18:44:42 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk15.main 2019-09-07 18:44:43 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk16.main 2019-09-07 18:44:43 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk17.main 2019-09-07 18:44:44 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk18.main 2019-09-07 18:44:45 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk19.main 2019-09-07 18:44:45 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk20.main 2019-09-07 18:44:46 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk21.main 2019-09-07 18:44:47 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk22.main 2019-09-07 18:44:47 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk23.main 2019-09-07 18:44:48 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk24.main 2019-09-07 18:44:50 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk25.main 2019-09-07 18:44:50 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk26.main 2019-09-07 18:44:51 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk27.main 2019-09-07 18:44:51 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk28.main 2019-09-07 18:44:52 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk29.main 2019-09-07 18:44:52 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk30.main 2019-09-07 18:44:52 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk31.main 2019-09-07 18:44:53 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk32.main 2019-09-07 18:44:53 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk33.main 2019-09-07 18:44:53 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk34.main 2019-09-07 18:44:54 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk35.main 2019-09-07 18:44:54 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk36.main 2019-09-07 18:44:55 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk37.main 2019-09-07 18:44:55 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk38.main 2019-09-07 18:44:55 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk39.main 2019-09-07 18:44:57 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk40.main 2019-09-07 18:44:57 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk41.main 2019-09-07 18:44:57 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk42.main 2019-09-07 18:44:58 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk43.main 2019-09-07 18:44:58 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk44.main 2019-09-07 18:50:37 [runtime] (update) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0 chunks running (0/45 completed) 2019-09-07 18:55:37 [runtime] (update) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0 chunks running (28/45 completed) 2019-09-07 19:01:09 [runtime] (update) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0 chunks running (29/45 completed) 2019-09-07 19:02:03 [runtime] (chunks_complete) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS 2019-09-07 19:02:04 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.join 2019-09-07 19:03:26 [runtime] (join_complete) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS 2019-09-07 19:03:40 [runtime] (ready) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS 2019-09-07 19:03:40 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.split 2019-09-07 19:03:45 [runtime] (split_complete) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS 2019-09-07 19:03:49 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk00.main 2019-09-07 19:03:50 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk01.main 2019-09-07 19:03:50 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk02.main 2019-09-07 19:03:51 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk03.main 2019-09-07 19:03:51 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk04.main 2019-09-07 19:03:52 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk05.main 2019-09-07 19:03:52 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk06.main 2019-09-07 19:03:54 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk07.main 2019-09-07 19:03:56 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk08.main 2019-09-07 19:03:59 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk09.main 2019-09-07 19:04:01 [runtime] (run:local) 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ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES 2019-09-07 21:22:38 [runtime] (ready) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES 2019-09-07 21:22:39 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.split 2019-09-07 21:22:39 [runtime] (ready) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS 2019-09-07 21:22:39 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.split 2019-09-07 21:22:42 [runtime] (split_complete) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS 2019-09-07 21:22:46 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk00.main 2019-09-07 21:22:47 [runtime] (run:local) 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ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk31.main 2019-09-07 21:30:45 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk32.main 2019-09-07 21:30:46 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk33.main 2019-09-07 21:30:46 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk34.main 2019-09-07 21:30:48 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk35.main 2019-09-07 21:30:55 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk36.main 2019-09-07 21:31:09 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk37.main 2019-09-07 21:31:21 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk38.main 2019-09-07 21:31:33 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk39.main 2019-09-07 21:31:39 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk40.main 2019-09-07 21:31:41 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk41.main 2019-09-07 21:31:41 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk42.main 2019-09-07 21:31:42 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk43.main 2019-09-07 21:31:42 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk44.main 2019-09-07 21:31:42 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk45.main 2019-09-07 21:31:42 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk46.main 2019-09-07 21:36:43 [runtime] (update) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0 chunks running (0/47 completed) 2019-09-07 21:36:43 [runtime] (update) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 chunks running (29/47 completed) 2019-09-07 21:37:22 [runtime] (chunks_complete) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS 2019-09-07 21:37:23 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.join 2019-09-07 21:41:50 [runtime] (update) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0 chunks running (38/47 completed) 2019-09-07 21:42:58 [runtime] (chunks_complete) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES 2019-09-07 21:43:00 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.join 2019-09-07 21:43:25 [runtime] (update) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 join_running 2019-09-07 21:49:09 [runtime] (update) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0 join_running 2019-09-07 21:49:27 [runtime] (update) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 join_running 2019-09-07 21:55:08 [runtime] (update) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0 join_running 2019-09-07 21:55:31 [runtime] (update) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 join_running 2019-09-07 21:55:31 [runtime] (join_complete) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES 2019-09-07 21:55:49 [runtime] (ready) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES 2019-09-07 21:55:49 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES.fork0.split 2019-09-07 21:55:57 [runtime] (split_complete) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES 2019-09-07 21:55:59 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES.fork0.join 2019-09-07 21:58:13 [runtime] (join_complete) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES 2019-09-07 21:58:17 [runtime] (ready) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES 2019-09-07 21:58:18 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.split 2019-09-07 21:58:18 [runtime] (ready) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT 2019-09-07 21:58:21 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT.fork0.chnk0.main 2019-09-07 21:58:27 [runtime] (split_complete) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES 2019-09-07 21:58:38 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk00.main 2019-09-07 21:58:38 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk01.main 2019-09-07 21:58:39 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk02.main 2019-09-07 21:58:41 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk03.main 2019-09-07 21:58:41 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk04.main 2019-09-07 21:58:42 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk05.main 2019-09-07 21:58:43 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk06.main 2019-09-07 21:58:44 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk07.main 2019-09-07 21:58:45 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk08.main 2019-09-07 21:58:45 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk09.main 2019-09-07 21:58:46 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk10.main 2019-09-07 21:58:47 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk11.main 2019-09-07 21:58:47 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk12.main 2019-09-07 21:58:48 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk13.main 2019-09-07 21:58:49 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk14.main 2019-09-07 21:58:49 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk15.main 2019-09-07 21:58:50 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk16.main 2019-09-07 21:58:50 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk17.main 2019-09-07 21:58:51 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk18.main 2019-09-07 21:58:51 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk19.main 2019-09-07 21:58:52 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk20.main 2019-09-07 21:58:53 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk21.main 2019-09-07 21:58:53 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk22.main 2019-09-07 21:58:54 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk23.main 2019-09-07 21:58:55 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk24.main 2019-09-07 21:58:55 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk25.main 2019-09-07 21:58:56 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk26.main 2019-09-07 21:58:56 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk27.main 2019-09-07 21:58:56 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk28.main 2019-09-07 21:58:57 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk29.main 2019-09-07 21:58:57 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk30.main 2019-09-07 21:58:57 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk31.main 2019-09-07 21:58:58 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk32.main 2019-09-07 21:58:58 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk33.main 2019-09-07 21:58:58 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk34.main 2019-09-07 21:58:59 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk35.main 2019-09-07 21:58:59 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk36.main 2019-09-07 21:58:59 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk37.main 2019-09-07 21:59:00 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk38.main 2019-09-07 21:59:00 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk39.main 2019-09-07 21:59:01 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk40.main 2019-09-07 21:59:01 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk41.main 2019-09-07 21:59:01 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk42.main 2019-09-07 21:59:01 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk43.main 2019-09-07 21:59:02 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk44.main 2019-09-07 21:59:02 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk45.main 2019-09-07 21:59:02 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk46.main 2019-09-07 21:59:05 [runtime] (chunks_complete) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT 2019-09-07 21:59:05 [runtime] (ready) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX 2019-09-07 21:59:06 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX.fork0.split 2019-09-07 22:01:31 [runtime] (update) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 join_running 2019-09-07 22:02:23 [runtime] (split_complete) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX 2019-09-07 22:02:24 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX.fork0.join 2019-09-07 22:02:29 [runtime] (join_complete) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX 2019-09-07 22:02:31 [runtime] (ready) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_FBPCA 2019-09-07 22:02:32 [runtime] (disabled) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_FBPCA 2019-09-07 22:02:32 [runtime] (ready) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA 2019-09-07 22:02:32 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA.fork0.split 2019-09-07 22:02:34 [runtime] (ready) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS 2019-09-07 22:02:35 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS.fork0.split 2019-09-07 22:02:44 [runtime] (ready) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CORRECT_CHEMISTRY_BATCH 2019-09-07 22:02:44 [runtime] (disabled) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CORRECT_CHEMISTRY_BATCH 2019-09-07 22:02:47 [runtime] (split_complete) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS 2019-09-07 22:02:47 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS.fork0.join 2019-09-07 22:02:47 [runtime] (split_complete) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA 2019-09-07 22:02:47 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA.fork0.chnk0.main 2019-09-07 22:02:51 [runtime] (join_complete) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS 2019-09-07 22:02:52 [runtime] (chunks_complete) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA 2019-09-07 22:02:52 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA.fork0.join 2019-09-07 22:02:56 [runtime] (join_complete) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA 2019-09-07 22:02:56 [runtime] (ready) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT 2019-09-07 22:02:57 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT.fork0.chnk0.main 2019-09-07 22:03:01 [runtime] (chunks_complete) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT 2019-09-07 22:03:03 [runtime] (ready) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE 2019-09-07 22:03:04 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE.fork0.split 2019-09-07 22:03:04 [runtime] (ready) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP 2019-09-07 22:03:04 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP.fork0.split 2019-09-07 22:03:05 [runtime] (ready) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS 2019-09-07 22:03:05 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.split 2019-09-07 22:03:05 [runtime] (ready) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING 2019-09-07 22:03:06 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING.fork0.split 2019-09-07 22:03:09 [runtime] (split_complete) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE 2019-09-07 22:03:11 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE.fork0.chnk0.main 2019-09-07 22:03:12 [runtime] (split_complete) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS 2019-09-07 22:03:12 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk0.main 2019-09-07 22:03:13 [runtime] (split_complete) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING 2019-09-07 22:03:13 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING.fork0.chnk0.main 2019-09-07 22:03:15 [runtime] (split_complete) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP 2019-09-07 22:03:15 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP.fork0.chnk0.main 2019-09-07 22:03:17 [runtime] (chunks_complete) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE 2019-09-07 22:03:17 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE.fork0.join 2019-09-07 22:03:18 [runtime] (chunks_complete) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS 2019-09-07 22:03:19 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.join 2019-09-07 22:03:19 [runtime] (chunks_complete) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING 2019-09-07 22:03:19 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING.fork0.join 2019-09-07 22:03:22 [runtime] (chunks_complete) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP 2019-09-07 22:03:23 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP.fork0.join 2019-09-07 22:03:23 [runtime] (join_complete) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE 2019-09-07 22:03:24 [runtime] (join_complete) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS 2019-09-07 22:03:25 [runtime] (join_complete) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING 2019-09-07 22:03:26 [runtime] (ready) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS 2019-09-07 22:03:27 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS.fork0.split 2019-09-07 22:03:28 [runtime] (join_complete) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP 2019-09-07 22:03:30 [runtime] (split_complete) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS 2019-09-07 22:03:31 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS.fork0.chnk0.main 2019-09-07 22:03:33 [runtime] (chunks_complete) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES 2019-09-07 22:03:34 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.join 2019-09-07 22:03:34 [runtime] (chunks_complete) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS 2019-09-07 22:03:35 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS.fork0.join 2019-09-07 22:03:41 [runtime] (join_complete) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS 2019-09-07 22:03:42 [runtime] (ready) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.COMBINE_CLUSTERING 2019-09-07 22:03:43 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.COMBINE_CLUSTERING.fork0.chnk0.main 2019-09-07 22:03:46 [runtime] (chunks_complete) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.COMBINE_CLUSTERING 2019-09-07 22:03:47 [runtime] (ready) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION 2019-09-07 22:03:47 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.split 2019-09-07 22:03:51 [runtime] (split_complete) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION 2019-09-07 22:03:52 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk0.main 2019-09-07 22:03:55 [runtime] (chunks_complete) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION 2019-09-07 22:03:56 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.join 2019-09-07 22:04:00 [runtime] (join_complete) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION 2019-09-07 22:04:01 [runtime] (ready) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS 2019-09-07 22:04:01 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS.fork0.split 2019-09-07 22:04:04 [runtime] (split_complete) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS 2019-09-07 22:04:04 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS.fork0.chnk0.main 2019-09-07 22:04:07 [runtime] (chunks_complete) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS 2019-09-07 22:04:08 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS.fork0.join 2019-09-07 22:04:11 [runtime] (join_complete) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS 2019-09-07 22:05:32 [runtime] (join_complete) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES 2019-09-07 22:05:36 [runtime] (ready) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS 2019-09-07 22:05:36 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS.fork0.split 2019-09-07 22:05:44 [runtime] (split_complete) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS 2019-09-07 22:05:44 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS.fork0.chnk0.main 2019-09-07 22:07:30 [runtime] (chunks_complete) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS 2019-09-07 22:07:31 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS.fork0.join 2019-09-07 22:07:34 [runtime] (update) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 join_running 2019-09-07 22:07:36 [runtime] (join_complete) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS 2019-09-07 22:07:37 [runtime] (ready) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS 2019-09-07 22:07:37 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS.fork0.split 2019-09-07 22:07:42 [runtime] (split_complete) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS 2019-09-07 22:07:42 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS.fork0.chnk0.main 2019-09-07 22:07:46 [runtime] (chunks_complete) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS 2019-09-07 22:07:47 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS.fork0.join 2019-09-07 22:07:51 [runtime] (join_complete) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS 2019-09-07 22:07:56 [runtime] (ready) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.CALL_PROTOSPACERS 2019-09-07 22:07:56 [runtime] (disabled) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.CALL_PROTOSPACERS 2019-09-07 22:07:57 [runtime] (ready) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET 2019-09-07 22:07:57 [runtime] (disabled) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET 2019-09-07 22:07:57 [runtime] (ready) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS 2019-09-07 22:07:58 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS.fork0.chnk0.main 2019-09-07 22:07:58 [runtime] (ready) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE 2019-09-07 22:07:58 [runtime] (disabled) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE 2019-09-07 22:07:58 [runtime] (ready) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS 2019-09-07 22:07:59 [runtime] (disabled) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS 2019-09-07 22:07:59 [runtime] (disabled) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER 2019-09-07 22:08:14 [runtime] (chunks_complete) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS 2019-09-07 22:08:17 [runtime] (ready) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS 2019-09-07 22:08:18 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS.fork0.split 2019-09-07 22:08:21 [runtime] (split_complete) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS 2019-09-07 22:08:21 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS.fork0.chnk0.main 2019-09-07 22:08:25 [runtime] (chunks_complete) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS 2019-09-07 22:08:25 [runtime] (run:local) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS.fork0.join 2019-09-07 22:08:28 [runtime] (join_complete) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS 2019-09-07 22:13:32 [runtime] (update) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 join_running 2019-09-07 22:19:34 [runtime] (update) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 join_running 2019-09-07 22:19:52 [runtime] (join_complete) ID.10X_G171C_mm9_default.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS Outputs: - Run summary HTML: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_default/outs/web_summary.html - Run summary CSV: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_default/outs/metrics_summary.csv - BAM: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_default/outs/possorted_genome_bam.bam - BAM index: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_default/outs/possorted_genome_bam.bam.bai - Filtered feature-barcode matrices MEX: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_default/outs/filtered_feature_bc_matrix - Filtered feature-barcode matrices HDF5: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_default/outs/filtered_feature_bc_matrix.h5 - Unfiltered feature-barcode matrices MEX: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_default/outs/raw_feature_bc_matrix - Unfiltered feature-barcode matrices HDF5: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_default/outs/raw_feature_bc_matrix.h5 - Secondary analysis output CSV: null - Per-molecule read information: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_default/outs/molecule_info.h5 - CRISPR-specific analysis: null - Loupe Cell Browser file: null - Feature Reference: null Waiting 6 seconds for UI to do final refresh. Pipestance completed successfully! 2019-09-07 22:20:11 Shutting down. Saving pipestance info to "10X_G171C_mm9_default/10X_G171C_mm9_default.mri.tgz" Finished .............. Sat Sep 7 22:21:00 EDT 2019