========================================================== Starting on : Sat Sep 7 13:58:49 EDT 2019 Running on node : scc-wj1 Current job ID : 9189729 Current job name : dropseq_10X_G171C_mm9_2000cells_omp28 Task index number : ========================================================== /share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/bin cellranger count (3.1.0) Copyright (c) 2019 10x Genomics, Inc. All rights reserved. ------------------------------------------------------------------------------- Martian Runtime - '3.1.0-v3.2.3' Serving UI at http://scc-wj1:34884?auth=CcXbxNH9-q11g5wHB7MbFiZhWCjh4XosG72AjRq70sU Running preflight checks (please wait)... 2019-09-07 13:58:51 [runtime] (ready) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF 2019-09-07 13:58:53 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF.fork0.chnk0.main 2019-09-07 13:58:58 [runtime] (chunks_complete) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF Checking sample info... Checking FASTQ folder... Checking libraries... Checking reference... Checking reference_path (/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/ref/mm9/mm9_usethis) on scc-wj1... Checking chemistry... Checking optional arguments... mrc: '3.1.0-v3.2.3' mrp: '3.1.0-v3.2.3' Anaconda: Python 2.7.14 :: Anaconda, Inc. numpy: 1.14.2 scipy: 1.0.1 pysam: 0.14.1 h5py: 2.8.0 pandas: 0.22.0 STAR: STAR_2.5.1b samtools: samtools 1.7 Using htslib 1.7 Copyright (C) 2018 Genome Research Ltd. 2019-09-07 13:59:09 [runtime] (ready) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.DISABLE_FEATURE_STAGES 2019-09-07 13:59:10 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.DISABLE_FEATURE_STAGES.fork0.chnk0.main 2019-09-07 13:59:10 [runtime] (ready) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY 2019-09-07 13:59:11 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0.main 2019-09-07 13:59:11 [runtime] (ready) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION 2019-09-07 13:59:12 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION.fork0.chnk0.main 2019-09-07 13:59:13 [runtime] (chunks_complete) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.DISABLE_FEATURE_STAGES 2019-09-07 13:59:14 [runtime] (progress) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0: Building transcriptome... 2019-09-07 13:59:14 [runtime] (chunks_complete) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION 2019-09-07 13:59:24 [runtime] (progress) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0: Building kmer index... 2019-09-07 14:01:14 [runtime] (progress) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0: Mapping reads... 2019-09-07 14:01:29 [runtime] (chunks_complete) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY 2019-09-07 14:01:31 [runtime] (ready) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS 2019-09-07 14:01:31 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS.fork0.chnk0.main 2019-09-07 14:01:37 [runtime] (chunks_complete) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS 2019-09-07 14:01:38 [runtime] (ready) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS 2019-09-07 14:01:38 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.split 2019-09-07 14:01:38 [runtime] (ready) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY 2019-09-07 14:01:39 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY.fork0.split 2019-09-07 14:01:40 [runtime] (split_complete) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS 2019-09-07 14:01:40 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.chnk0.main 2019-09-07 14:01:44 [runtime] (split_complete) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY 2019-09-07 14:01:44 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY.fork0.join 2019-09-07 14:02:12 [runtime] (join_complete) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY 2019-09-07 14:07:48 [runtime] (update) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0 chunks_running 2019-09-07 14:13:54 [runtime] (update) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0 chunks_running 2019-09-07 14:20:01 [runtime] (update) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0 chunks_running 2019-09-07 14:26:06 [runtime] (update) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0 chunks_running 2019-09-07 14:29:10 [runtime] (chunks_complete) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS 2019-09-07 14:29:11 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.join 2019-09-07 14:29:13 [runtime] (join_complete) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS 2019-09-07 14:29:15 [runtime] (ready) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS 2019-09-07 14:29:15 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.split 2019-09-07 14:29:21 [runtime] (split_complete) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS 2019-09-07 14:29:25 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk00.main 2019-09-07 14:29:25 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk01.main 2019-09-07 14:29:45 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk02.main 2019-09-07 14:29:45 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk03.main 2019-09-07 14:29:46 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk04.main 2019-09-07 14:29:46 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk05.main 2019-09-07 14:29:47 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk06.main 2019-09-07 14:29:47 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk07.main 2019-09-07 14:29:47 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk08.main 2019-09-07 14:29:48 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk09.main 2019-09-07 14:29:48 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk10.main 2019-09-07 14:29:49 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk11.main 2019-09-07 14:29:50 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk12.main 2019-09-07 14:29:51 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk13.main 2019-09-07 14:29:51 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk14.main 2019-09-07 14:29:52 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk15.main 2019-09-07 14:29:53 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk16.main 2019-09-07 14:29:54 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk17.main 2019-09-07 14:29:55 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk18.main 2019-09-07 14:29:55 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk19.main 2019-09-07 14:29:56 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk20.main 2019-09-07 14:29:56 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk21.main 2019-09-07 14:29:58 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk22.main 2019-09-07 14:29:59 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk23.main 2019-09-07 14:30:00 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk24.main 2019-09-07 14:30:00 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk25.main 2019-09-07 14:30:01 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk26.main 2019-09-07 14:30:01 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk27.main 2019-09-07 14:30:02 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk28.main 2019-09-07 14:30:03 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk29.main 2019-09-07 14:30:03 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk30.main 2019-09-07 14:30:03 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk31.main 2019-09-07 14:30:04 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk32.main 2019-09-07 14:30:04 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk33.main 2019-09-07 14:30:04 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk34.main 2019-09-07 14:30:05 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk35.main 2019-09-07 14:30:05 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk36.main 2019-09-07 14:30:05 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk37.main 2019-09-07 14:30:05 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk38.main 2019-09-07 14:30:06 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk39.main 2019-09-07 14:30:06 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk40.main 2019-09-07 14:30:06 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk41.main 2019-09-07 14:30:07 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk42.main 2019-09-07 14:30:07 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk43.main 2019-09-07 14:30:07 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk44.main 2019-09-07 14:35:52 [runtime] (update) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0 chunks running (0/45 completed) 2019-09-07 14:40:56 [runtime] (update) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0 chunks running (28/45 completed) 2019-09-07 14:45:57 [runtime] (update) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0 chunks running (28/45 completed) 2019-09-07 14:50:59 [runtime] (update) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0 chunks running (28/45 completed) 2019-09-07 14:56:04 [runtime] (update) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0 chunks running (28/45 completed) 2019-09-07 15:01:29 [runtime] (update) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0 chunks running (28/45 completed) 2019-09-07 15:07:04 [runtime] (update) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0 chunks running (28/45 completed) 2019-09-07 15:12:14 [runtime] (update) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0 chunks running (30/45 completed) 2019-09-07 15:13:18 [runtime] (chunks_complete) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS 2019-09-07 15:13:19 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.join 2019-09-07 15:15:32 [runtime] (join_complete) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS 2019-09-07 15:15:45 [runtime] (ready) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS 2019-09-07 15:15:45 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.split 2019-09-07 15:16:02 [runtime] (split_complete) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS 2019-09-07 15:16:07 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk00.main 2019-09-07 15:16:07 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk01.main 2019-09-07 15:16:07 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk02.main 2019-09-07 15:16:08 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk03.main 2019-09-07 15:16:08 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk04.main 2019-09-07 15:16:09 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk05.main 2019-09-07 15:16:10 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk06.main 2019-09-07 15:16:10 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk07.main 2019-09-07 15:16:11 [runtime] 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ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.join 2019-09-07 17:25:34 [runtime] (join_complete) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES 2019-09-07 17:25:39 [runtime] (ready) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES 2019-09-07 17:25:39 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.split 2019-09-07 17:25:39 [runtime] (ready) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS 2019-09-07 17:25:40 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.split 2019-09-07 17:25:44 [runtime] (split_complete) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS 2019-09-07 17:25:48 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk00.main 2019-09-07 17:25:49 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk01.main 2019-09-07 17:25:49 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk02.main 2019-09-07 17:25:49 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk03.main 2019-09-07 17:25:50 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk04.main 2019-09-07 17:25:51 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk05.main 2019-09-07 17:25:51 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk06.main 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ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk30.main 2019-09-07 17:32:10 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk31.main 2019-09-07 17:32:12 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk32.main 2019-09-07 17:32:14 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk33.main 2019-09-07 17:32:16 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk34.main 2019-09-07 17:32:19 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk35.main 2019-09-07 17:32:23 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk36.main 2019-09-07 17:32:29 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk37.main 2019-09-07 17:32:35 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk38.main 2019-09-07 17:32:40 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk39.main 2019-09-07 17:32:46 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk40.main 2019-09-07 17:32:49 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk41.main 2019-09-07 17:32:51 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk42.main 2019-09-07 17:32:54 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk43.main 2019-09-07 17:32:58 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk44.main 2019-09-07 17:33:03 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk45.main 2019-09-07 17:33:11 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk46.main 2019-09-07 17:35:52 [runtime] (update) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 chunks running (29/47 completed) 2019-09-07 17:36:55 [runtime] (chunks_complete) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS 2019-09-07 17:36:55 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.join 2019-09-07 17:38:34 [runtime] (update) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0 chunks running (12/47 completed) 2019-09-07 17:42:41 [runtime] (update) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 join_running 2019-09-07 17:43:12 [runtime] (chunks_complete) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES 2019-09-07 17:43:14 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.join 2019-09-07 17:48:41 [runtime] (update) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 join_running 2019-09-07 17:49:17 [runtime] (update) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0 join_running 2019-09-07 17:54:41 [runtime] (update) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 join_running 2019-09-07 17:55:17 [runtime] (update) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0 join_running 2019-09-07 17:56:11 [runtime] (join_complete) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES 2019-09-07 17:56:21 [runtime] (ready) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES 2019-09-07 17:56:21 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES.fork0.split 2019-09-07 17:56:28 [runtime] (split_complete) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES 2019-09-07 17:56:28 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES.fork0.join 2019-09-07 17:57:35 [runtime] (join_complete) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES 2019-09-07 17:57:37 [runtime] (ready) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES 2019-09-07 17:57:37 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.split 2019-09-07 17:57:37 [runtime] (ready) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT 2019-09-07 17:57:39 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT.fork0.chnk0.main 2019-09-07 17:57:43 [runtime] (split_complete) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES 2019-09-07 17:57:51 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk00.main 2019-09-07 17:57:52 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk01.main 2019-09-07 17:57:52 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk02.main 2019-09-07 17:57:53 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk03.main 2019-09-07 17:57:54 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk04.main 2019-09-07 17:57:55 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk05.main 2019-09-07 17:57:56 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk06.main 2019-09-07 17:57:56 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk07.main 2019-09-07 17:57:57 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk08.main 2019-09-07 17:57:58 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk09.main 2019-09-07 17:57:59 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk10.main 2019-09-07 17:58:00 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk11.main 2019-09-07 17:58:02 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk12.main 2019-09-07 17:58:02 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk13.main 2019-09-07 17:58:03 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk14.main 2019-09-07 17:58:04 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk15.main 2019-09-07 17:58:05 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk16.main 2019-09-07 17:58:06 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk17.main 2019-09-07 17:58:06 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk18.main 2019-09-07 17:58:07 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk19.main 2019-09-07 17:58:08 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk20.main 2019-09-07 17:58:08 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk21.main 2019-09-07 17:58:09 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk22.main 2019-09-07 17:58:10 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk23.main 2019-09-07 17:58:11 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk24.main 2019-09-07 17:58:11 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk25.main 2019-09-07 17:58:12 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk26.main 2019-09-07 17:58:12 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk27.main 2019-09-07 17:58:13 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk28.main 2019-09-07 17:58:13 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk29.main 2019-09-07 17:58:14 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk30.main 2019-09-07 17:58:14 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk31.main 2019-09-07 17:58:14 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk32.main 2019-09-07 17:58:15 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk33.main 2019-09-07 17:58:16 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk34.main 2019-09-07 17:58:16 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk35.main 2019-09-07 17:58:16 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk36.main 2019-09-07 17:58:17 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk37.main 2019-09-07 17:58:17 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk38.main 2019-09-07 17:58:17 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk39.main 2019-09-07 17:58:18 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk40.main 2019-09-07 17:58:18 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk41.main 2019-09-07 17:58:18 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk42.main 2019-09-07 17:58:19 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk43.main 2019-09-07 17:58:19 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk44.main 2019-09-07 17:58:20 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk45.main 2019-09-07 17:58:20 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk46.main 2019-09-07 17:58:20 [runtime] (chunks_complete) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT 2019-09-07 17:58:25 [runtime] (ready) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX 2019-09-07 17:58:25 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX.fork0.split 2019-09-07 18:00:42 [runtime] (update) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 join_running 2019-09-07 18:01:29 [runtime] (split_complete) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX 2019-09-07 18:01:30 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX.fork0.join 2019-09-07 18:01:36 [runtime] (join_complete) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX 2019-09-07 18:01:38 [runtime] (ready) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA 2019-09-07 18:01:39 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA.fork0.split 2019-09-07 18:01:39 [runtime] (ready) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_FBPCA 2019-09-07 18:01:39 [runtime] (disabled) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_FBPCA 2019-09-07 18:01:39 [runtime] (ready) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS 2019-09-07 18:01:40 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS.fork0.split 2019-09-07 18:01:42 [runtime] (ready) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CORRECT_CHEMISTRY_BATCH 2019-09-07 18:01:43 [runtime] (disabled) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CORRECT_CHEMISTRY_BATCH 2019-09-07 18:01:46 [runtime] (split_complete) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA 2019-09-07 18:01:47 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA.fork0.chnk0.main 2019-09-07 18:01:49 [runtime] (split_complete) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS 2019-09-07 18:01:50 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS.fork0.join 2019-09-07 18:02:00 [runtime] (chunks_complete) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA 2019-09-07 18:02:01 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA.fork0.join 2019-09-07 18:02:02 [runtime] (join_complete) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS 2019-09-07 18:02:07 [runtime] (join_complete) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA 2019-09-07 18:02:08 [runtime] (ready) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT 2019-09-07 18:02:09 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT.fork0.chnk0.main 2019-09-07 18:02:13 [runtime] (chunks_complete) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT 2019-09-07 18:02:15 [runtime] (ready) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING 2019-09-07 18:02:15 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING.fork0.split 2019-09-07 18:02:16 [runtime] (ready) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP 2019-09-07 18:02:16 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP.fork0.split 2019-09-07 18:02:18 [runtime] (ready) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE 2019-09-07 18:02:19 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE.fork0.split 2019-09-07 18:02:19 [runtime] (ready) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS 2019-09-07 18:02:21 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.split 2019-09-07 18:02:24 [runtime] (split_complete) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING 2019-09-07 18:02:24 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING.fork0.chnk0.main 2019-09-07 18:02:26 [runtime] (split_complete) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP 2019-09-07 18:02:27 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP.fork0.chnk0.main 2019-09-07 18:02:28 [runtime] (split_complete) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE 2019-09-07 18:02:29 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE.fork0.chnk0.main 2019-09-07 18:02:29 [runtime] (split_complete) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS 2019-09-07 18:02:30 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk0.main 2019-09-07 18:02:32 [runtime] (chunks_complete) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING 2019-09-07 18:02:33 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING.fork0.join 2019-09-07 18:02:35 [runtime] (chunks_complete) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP 2019-09-07 18:02:36 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP.fork0.join 2019-09-07 18:02:38 [runtime] (chunks_complete) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE 2019-09-07 18:02:38 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE.fork0.join 2019-09-07 18:02:39 [runtime] (chunks_complete) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS 2019-09-07 18:02:39 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.join 2019-09-07 18:02:41 [runtime] (join_complete) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING 2019-09-07 18:02:42 [runtime] (chunks_complete) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES 2019-09-07 18:02:43 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.join 2019-09-07 18:02:46 [runtime] (join_complete) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP 2019-09-07 18:02:46 [runtime] (join_complete) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE 2019-09-07 18:02:47 [runtime] (ready) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS 2019-09-07 18:02:48 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS.fork0.split 2019-09-07 18:02:48 [runtime] (join_complete) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS 2019-09-07 18:02:52 [runtime] (split_complete) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS 2019-09-07 18:02:53 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS.fork0.chnk0.main 2019-09-07 18:02:57 [runtime] (chunks_complete) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS 2019-09-07 18:02:57 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS.fork0.join 2019-09-07 18:03:03 [runtime] (join_complete) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS 2019-09-07 18:03:04 [runtime] (ready) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.COMBINE_CLUSTERING 2019-09-07 18:03:05 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.COMBINE_CLUSTERING.fork0.chnk0.main 2019-09-07 18:03:09 [runtime] (chunks_complete) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.COMBINE_CLUSTERING 2019-09-07 18:03:10 [runtime] (ready) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION 2019-09-07 18:03:11 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.split 2019-09-07 18:03:14 [runtime] (split_complete) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION 2019-09-07 18:03:14 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk0.main 2019-09-07 18:03:18 [runtime] (chunks_complete) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION 2019-09-07 18:03:19 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.join 2019-09-07 18:03:23 [runtime] (join_complete) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION 2019-09-07 18:03:24 [runtime] (ready) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS 2019-09-07 18:03:24 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS.fork0.split 2019-09-07 18:03:29 [runtime] (split_complete) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS 2019-09-07 18:03:30 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS.fork0.chnk0.main 2019-09-07 18:03:33 [runtime] (chunks_complete) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS 2019-09-07 18:03:34 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS.fork0.join 2019-09-07 18:03:37 [runtime] (join_complete) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS 2019-09-07 18:04:39 [runtime] (join_complete) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES 2019-09-07 18:04:42 [runtime] (ready) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS 2019-09-07 18:04:42 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS.fork0.split 2019-09-07 18:04:46 [runtime] (split_complete) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS 2019-09-07 18:04:46 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS.fork0.chnk0.main 2019-09-07 18:06:29 [runtime] (chunks_complete) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS 2019-09-07 18:06:30 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS.fork0.join 2019-09-07 18:06:34 [runtime] (join_complete) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS 2019-09-07 18:06:35 [runtime] (ready) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS 2019-09-07 18:06:35 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS.fork0.split 2019-09-07 18:06:38 [runtime] (split_complete) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS 2019-09-07 18:06:39 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS.fork0.chnk0.main 2019-09-07 18:06:42 [runtime] (update) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 join_running 2019-09-07 18:06:42 [runtime] (chunks_complete) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS 2019-09-07 18:06:43 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS.fork0.join 2019-09-07 18:06:46 [runtime] (join_complete) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS 2019-09-07 18:06:51 [runtime] (ready) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.CALL_PROTOSPACERS 2019-09-07 18:06:51 [runtime] (disabled) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.CALL_PROTOSPACERS 2019-09-07 18:06:51 [runtime] (ready) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS 2019-09-07 18:06:52 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS.fork0.chnk0.main 2019-09-07 18:06:52 [runtime] (ready) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE 2019-09-07 18:06:52 [runtime] (disabled) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE 2019-09-07 18:06:52 [runtime] (ready) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET 2019-09-07 18:06:52 [runtime] (disabled) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET 2019-09-07 18:06:52 [runtime] (ready) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS 2019-09-07 18:06:53 [runtime] (disabled) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS 2019-09-07 18:06:53 [runtime] (disabled) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER 2019-09-07 18:07:07 [runtime] (chunks_complete) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS 2019-09-07 18:07:11 [runtime] (ready) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS 2019-09-07 18:07:11 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS.fork0.split 2019-09-07 18:07:15 [runtime] (split_complete) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS 2019-09-07 18:07:15 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS.fork0.chnk0.main 2019-09-07 18:07:19 [runtime] (chunks_complete) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS 2019-09-07 18:07:20 [runtime] (run:local) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS.fork0.join 2019-09-07 18:07:23 [runtime] (join_complete) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS 2019-09-07 18:12:44 [runtime] (update) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 join_running 2019-09-07 18:13:57 [runtime] (join_complete) ID.10X_G171C_mm9_2000.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS Outputs: - Run summary HTML: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/outs/web_summary.html - Run summary CSV: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/outs/metrics_summary.csv - BAM: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/outs/possorted_genome_bam.bam - BAM index: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/outs/possorted_genome_bam.bam.bai - Filtered feature-barcode matrices MEX: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/outs/filtered_feature_bc_matrix - Filtered feature-barcode matrices HDF5: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/outs/filtered_feature_bc_matrix.h5 - Unfiltered feature-barcode matrices MEX: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/outs/raw_feature_bc_matrix - Unfiltered feature-barcode matrices HDF5: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/outs/raw_feature_bc_matrix.h5 - Secondary analysis output CSV: null - Per-molecule read information: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_2000/outs/molecule_info.h5 - CRISPR-specific analysis: null - Loupe Cell Browser file: null - Feature Reference: null Waiting 6 seconds for UI to do final refresh. Pipestance completed successfully! 2019-09-07 18:14:18 Shutting down. Saving pipestance info to "10X_G171C_mm9_2000/10X_G171C_mm9_2000.mri.tgz" Finished .............. Sat Sep 7 18:15:06 EDT 2019