========================================================== Starting on : Sat Sep 7 09:36:18 EDT 2019 Running on node : scc-wk1 Current job ID : 9189727 Current job name : dropseq_10X_G171C_mm9_1500cells_omp28 Task index number : ========================================================== /share/pkg.7/cellranger/3.1.0/install/bin/cellranger-cs/3.1.0/bin cellranger count (3.1.0) Copyright (c) 2019 10x Genomics, Inc. All rights reserved. ------------------------------------------------------------------------------- Martian Runtime - '3.1.0-v3.2.3' Serving UI at http://scc-wk1:39577?auth=eNk73_UMfAp7srv9See_F-A2PkDtaeR_QgP4G0ttrqU Running preflight checks (please wait)... 2019-09-07 09:36:21 [runtime] (ready) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF 2019-09-07 09:36:22 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF.fork0.chnk0.main 2019-09-07 09:36:27 [runtime] (chunks_complete) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.EXPAND_SAMPLE_DEF Checking sample info... Checking FASTQ folder... Checking libraries... Checking reference... Checking reference_path (/net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/ref/mm9/mm9_usethis) on scc-wk1... Checking chemistry... Checking optional arguments... mrc: '3.1.0-v3.2.3' mrp: '3.1.0-v3.2.3' Anaconda: Python 2.7.14 :: Anaconda, Inc. numpy: 1.14.2 scipy: 1.0.1 pysam: 0.14.1 h5py: 2.8.0 pandas: 0.22.0 STAR: STAR_2.5.1b samtools: samtools 1.7 Using htslib 1.7 Copyright (C) 2018 Genome Research Ltd. 2019-09-07 09:36:38 [runtime] (ready) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.DISABLE_FEATURE_STAGES 2019-09-07 09:36:39 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.DISABLE_FEATURE_STAGES.fork0.chnk0.main 2019-09-07 09:36:39 [runtime] (ready) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY 2019-09-07 09:36:40 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0.main 2019-09-07 09:36:40 [runtime] (ready) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION 2019-09-07 09:36:41 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION.fork0.chnk0.main 2019-09-07 09:36:42 [runtime] (chunks_complete) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.DISABLE_FEATURE_STAGES 2019-09-07 09:36:45 [runtime] (chunks_complete) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION 2019-09-07 09:36:47 [runtime] (progress) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0: Building transcriptome... 2019-09-07 09:39:26 [runtime] (progress) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0: Building kmer index... 2019-09-07 09:41:04 [runtime] (progress) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY.fork0.chnk0: Mapping reads... 2019-09-07 09:41:20 [runtime] (chunks_complete) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHEMISTRY_DETECTOR.DETECT_CHEMISTRY 2019-09-07 09:41:21 [runtime] (ready) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS 2019-09-07 09:41:22 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS.fork0.chnk0.main 2019-09-07 09:41:26 [runtime] (chunks_complete) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SETUP_CHUNKS 2019-09-07 09:41:28 [runtime] (ready) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY 2019-09-07 09:41:28 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY.fork0.split 2019-09-07 09:41:28 [runtime] (ready) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS 2019-09-07 09:41:28 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.split 2019-09-07 09:41:32 [runtime] (split_complete) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS 2019-09-07 09:41:33 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.chnk0.main 2019-09-07 09:41:33 [runtime] (split_complete) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY 2019-09-07 09:41:34 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY.fork0.join 2019-09-07 09:41:54 [runtime] (join_complete) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.CHECK_BARCODES_COMPATIBILITY 2019-09-07 09:47:43 [runtime] (update) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0 chunks_running 2019-09-07 09:53:50 [runtime] (update) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0 chunks_running 2019-09-07 09:59:52 [runtime] (update) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0 chunks_running 2019-09-07 10:05:53 [runtime] (update) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0 chunks_running 2019-09-07 10:07:11 [runtime] (chunks_complete) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS 2019-09-07 10:07:11 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS.fork0.join 2019-09-07 10:07:13 [runtime] (join_complete) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.CHUNK_READS 2019-09-07 10:07:14 [runtime] (ready) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS 2019-09-07 10:07:14 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.split 2019-09-07 10:07:20 [runtime] (split_complete) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS 2019-09-07 10:07:25 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk00.main 2019-09-07 10:07:25 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk01.main 2019-09-07 10:07:25 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk02.main 2019-09-07 10:07:26 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk03.main 2019-09-07 10:07:27 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk04.main 2019-09-07 10:07:27 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk05.main 2019-09-07 10:07:28 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk06.main 2019-09-07 10:07:28 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk07.main 2019-09-07 10:07:29 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk08.main 2019-09-07 10:07:29 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk09.main 2019-09-07 10:07:30 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk10.main 2019-09-07 10:07:31 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk11.main 2019-09-07 10:07:31 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk12.main 2019-09-07 10:07:32 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk13.main 2019-09-07 10:07:33 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk14.main 2019-09-07 10:07:33 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk15.main 2019-09-07 10:07:34 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk16.main 2019-09-07 10:07:35 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk17.main 2019-09-07 10:07:36 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk18.main 2019-09-07 10:07:36 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk19.main 2019-09-07 10:07:36 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk20.main 2019-09-07 10:07:37 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk21.main 2019-09-07 10:07:37 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk22.main 2019-09-07 10:07:38 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk23.main 2019-09-07 10:07:38 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk24.main 2019-09-07 10:07:39 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk25.main 2019-09-07 10:07:39 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk26.main 2019-09-07 10:07:39 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk27.main 2019-09-07 10:07:40 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk28.main 2019-09-07 10:07:40 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk29.main 2019-09-07 10:07:41 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk30.main 2019-09-07 10:07:41 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk31.main 2019-09-07 10:07:41 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk32.main 2019-09-07 10:07:42 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk33.main 2019-09-07 10:07:42 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk34.main 2019-09-07 10:07:42 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk35.main 2019-09-07 10:07:43 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk36.main 2019-09-07 10:07:43 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk37.main 2019-09-07 10:07:43 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk38.main 2019-09-07 10:07:43 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk39.main 2019-09-07 10:07:43 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk40.main 2019-09-07 10:07:44 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk41.main 2019-09-07 10:07:44 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk42.main 2019-09-07 10:07:44 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk43.main 2019-09-07 10:07:44 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.chnk44.main 2019-09-07 10:13:30 [runtime] (update) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0 chunks running (0/45 completed) 2019-09-07 10:18:42 [runtime] (update) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0 chunks running (28/45 completed) 2019-09-07 10:24:28 [runtime] (update) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0 chunks running (29/45 completed) 2019-09-07 10:25:46 [runtime] (chunks_complete) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS 2019-09-07 10:25:47 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS.fork0.join 2019-09-07 10:27:13 [runtime] (join_complete) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.EXTRACT_READS 2019-09-07 10:27:24 [runtime] (ready) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS 2019-09-07 10:27:25 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.split 2019-09-07 10:27:30 [runtime] (split_complete) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS 2019-09-07 10:27:33 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk00.main 2019-09-07 10:27:33 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk01.main 2019-09-07 10:27:34 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk02.main 2019-09-07 10:27:34 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk03.main 2019-09-07 10:27:35 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk04.main 2019-09-07 10:27:35 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk05.main 2019-09-07 10:27:36 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk06.main 2019-09-07 10:27:36 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk07.main 2019-09-07 10:27:37 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk08.main 2019-09-07 10:27:39 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk09.main 2019-09-07 10:27:41 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk10.main 2019-09-07 10:27:45 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk11.main 2019-09-07 10:27:50 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_READ_REPORTS.fork0.chnk12.main 2019-09-07 10:27:56 [runtime] (run:local) 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ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ALIGN_READS 2019-09-07 11:28:48 [runtime] (ready) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS 2019-09-07 11:28:49 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.split 2019-09-07 11:28:51 [runtime] (split_complete) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS 2019-09-07 11:28:54 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk00.main 2019-09-07 11:28:55 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk01.main 2019-09-07 11:28:55 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.ATTACH_BCS_AND_UMIS.fork0.chnk02.main 2019-09-07 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ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0 chunks running (29/47 completed) 2019-09-07 12:47:36 [runtime] (chunks_complete) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES 2019-09-07 12:47:37 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES.fork0.join 2019-09-07 12:47:53 [runtime] (join_complete) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.MARK_DUPLICATES 2019-09-07 12:47:59 [runtime] (ready) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES 2019-09-07 12:47:59 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.split 2019-09-07 12:47:59 [runtime] (ready) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS 2019-09-07 12:48:00 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.split 2019-09-07 12:48:07 [runtime] (split_complete) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS 2019-09-07 12:48:14 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk00.main 2019-09-07 12:48:14 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk01.main 2019-09-07 12:48:15 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk02.main 2019-09-07 12:48:15 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk03.main 2019-09-07 12:48:16 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk04.main 2019-09-07 12:48:16 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk05.main 2019-09-07 12:48:17 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk06.main 2019-09-07 12:48:17 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk07.main 2019-09-07 12:48:17 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk08.main 2019-09-07 12:48:18 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk09.main 2019-09-07 12:48:19 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.chnk10.main 2019-09-07 12:48:19 [runtime] (run:local) 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2019-09-07 13:02:07 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk35.main 2019-09-07 13:02:08 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk36.main 2019-09-07 13:02:12 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk37.main 2019-09-07 13:02:16 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk38.main 2019-09-07 13:02:19 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk39.main 2019-09-07 13:02:23 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk40.main 2019-09-07 13:02:24 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk41.main 2019-09-07 13:02:26 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk42.main 2019-09-07 13:02:27 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk43.main 2019-09-07 13:02:28 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk44.main 2019-09-07 13:02:29 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk45.main 2019-09-07 13:02:30 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.chnk46.main 2019-09-07 13:04:16 [runtime] (chunks_complete) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS 2019-09-07 13:04:18 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0.join 2019-09-07 13:07:30 [runtime] (update) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0 chunks running (11/47 completed) 2019-09-07 13:09:49 [runtime] (update) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 join_running 2019-09-07 13:10:47 [runtime] (chunks_complete) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES 2019-09-07 13:10:49 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0.join 2019-09-07 13:15:43 [runtime] (update) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 join_running 2019-09-07 13:16:56 [runtime] (update) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0 join_running 2019-09-07 13:21:45 [runtime] (update) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 join_running 2019-09-07 13:22:57 [runtime] (update) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES.fork0 join_running 2019-09-07 13:23:16 [runtime] (join_complete) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.COUNT_GENES 2019-09-07 13:23:23 [runtime] (ready) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES 2019-09-07 13:23:24 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES.fork0.split 2019-09-07 13:23:28 [runtime] (split_complete) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES 2019-09-07 13:23:28 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES.fork0.join 2019-09-07 13:24:34 [runtime] (join_complete) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.FILTER_BARCODES 2019-09-07 13:24:35 [runtime] (ready) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT 2019-09-07 13:24:36 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT.fork0.chnk0.main 2019-09-07 13:24:36 [runtime] (ready) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES 2019-09-07 13:24:37 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.split 2019-09-07 13:24:40 [runtime] (chunks_complete) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.ANALYZER_PREFLIGHT 2019-09-07 13:24:42 [runtime] (ready) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX 2019-09-07 13:24:42 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX.fork0.split 2019-09-07 13:24:42 [runtime] (split_complete) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES 2019-09-07 13:24:50 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk00.main 2019-09-07 13:24:51 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk01.main 2019-09-07 13:24:51 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk02.main 2019-09-07 13:24:52 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk03.main 2019-09-07 13:24:52 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk04.main 2019-09-07 13:24:53 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk05.main 2019-09-07 13:24:53 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk06.main 2019-09-07 13:24:54 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk07.main 2019-09-07 13:24:55 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk08.main 2019-09-07 13:24:55 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk09.main 2019-09-07 13:24:56 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk10.main 2019-09-07 13:24:56 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk11.main 2019-09-07 13:24:57 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk12.main 2019-09-07 13:24:58 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk13.main 2019-09-07 13:24:58 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk14.main 2019-09-07 13:24:59 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk15.main 2019-09-07 13:24:59 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk16.main 2019-09-07 13:25:00 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk17.main 2019-09-07 13:25:00 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk18.main 2019-09-07 13:25:01 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk19.main 2019-09-07 13:25:01 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk20.main 2019-09-07 13:25:02 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk21.main 2019-09-07 13:25:02 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk22.main 2019-09-07 13:25:03 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk23.main 2019-09-07 13:25:04 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk24.main 2019-09-07 13:25:04 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk25.main 2019-09-07 13:25:05 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk26.main 2019-09-07 13:25:05 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk27.main 2019-09-07 13:25:06 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk28.main 2019-09-07 13:25:06 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk29.main 2019-09-07 13:25:06 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk30.main 2019-09-07 13:25:07 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk31.main 2019-09-07 13:25:07 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk32.main 2019-09-07 13:25:07 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk33.main 2019-09-07 13:25:08 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk34.main 2019-09-07 13:25:08 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk35.main 2019-09-07 13:25:08 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk36.main 2019-09-07 13:25:09 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk37.main 2019-09-07 13:25:09 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk38.main 2019-09-07 13:25:09 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk39.main 2019-09-07 13:25:10 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk40.main 2019-09-07 13:25:10 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk41.main 2019-09-07 13:25:10 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk42.main 2019-09-07 13:25:11 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk43.main 2019-09-07 13:25:11 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk44.main 2019-09-07 13:25:11 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk45.main 2019-09-07 13:25:12 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.chnk46.main 2019-09-07 13:25:14 [runtime] (split_complete) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX 2019-09-07 13:25:15 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX.fork0.join 2019-09-07 13:27:43 [runtime] (update) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 join_running 2019-09-07 13:28:30 [runtime] (join_complete) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.PREPROCESS_MATRIX 2019-09-07 13:28:34 [runtime] (ready) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA 2019-09-07 13:28:34 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA.fork0.split 2019-09-07 13:28:35 [runtime] (ready) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS 2019-09-07 13:28:35 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS.fork0.split 2019-09-07 13:28:35 [runtime] (ready) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_FBPCA 2019-09-07 13:28:36 [runtime] (disabled) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_FBPCA 2019-09-07 13:28:40 [runtime] (ready) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CORRECT_CHEMISTRY_BATCH 2019-09-07 13:28:40 [runtime] (disabled) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CORRECT_CHEMISTRY_BATCH 2019-09-07 13:28:43 [runtime] (split_complete) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA 2019-09-07 13:28:44 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA.fork0.chnk0.main 2019-09-07 13:28:44 [runtime] (split_complete) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS 2019-09-07 13:28:45 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS.fork0.join 2019-09-07 13:28:50 [runtime] (chunks_complete) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA 2019-09-07 13:28:50 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA.fork0.join 2019-09-07 13:28:51 [runtime] (join_complete) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_MULTIGENOME_ANALYSIS 2019-09-07 13:28:54 [runtime] (join_complete) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_PCA 2019-09-07 13:28:56 [runtime] (ready) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT 2019-09-07 13:28:57 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT.fork0.chnk0.main 2019-09-07 13:28:59 [runtime] (chunks_complete) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.CHOOSE_DIMENSION_REDUCTION_OUTPUT 2019-09-07 13:29:02 [runtime] (ready) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP 2019-09-07 13:29:03 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP.fork0.split 2019-09-07 13:29:03 [runtime] (ready) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING 2019-09-07 13:29:03 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING.fork0.split 2019-09-07 13:29:03 [runtime] (ready) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS 2019-09-07 13:29:04 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.split 2019-09-07 13:29:04 [runtime] (ready) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE 2019-09-07 13:29:05 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE.fork0.split 2019-09-07 13:29:09 [runtime] (split_complete) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING 2019-09-07 13:29:10 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING.fork0.chnk0.main 2019-09-07 13:29:10 [runtime] (split_complete) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP 2019-09-07 13:29:11 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP.fork0.chnk0.main 2019-09-07 13:29:11 [runtime] (split_complete) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS 2019-09-07 13:29:12 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.chnk0.main 2019-09-07 13:29:12 [runtime] (split_complete) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE 2019-09-07 13:29:13 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE.fork0.chnk0.main 2019-09-07 13:29:15 [runtime] (chunks_complete) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING 2019-09-07 13:29:15 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING.fork0.join 2019-09-07 13:29:19 [runtime] (chunks_complete) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS 2019-09-07 13:29:19 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS.fork0.join 2019-09-07 13:29:20 [runtime] (join_complete) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_GRAPH_CLUSTERING 2019-09-07 13:29:21 [runtime] (chunks_complete) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE 2019-09-07 13:29:22 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE.fork0.join 2019-09-07 13:29:23 [runtime] (chunks_complete) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP 2019-09-07 13:29:23 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP.fork0.join 2019-09-07 13:29:25 [runtime] (ready) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS 2019-09-07 13:29:25 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS.fork0.split 2019-09-07 13:29:26 [runtime] (join_complete) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_KMEANS 2019-09-07 13:29:27 [runtime] (join_complete) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_TSNE 2019-09-07 13:29:27 [runtime] (chunks_complete) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES 2019-09-07 13:29:28 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES.fork0.join 2019-09-07 13:29:29 [runtime] (join_complete) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_UMAP 2019-09-07 13:29:30 [runtime] (split_complete) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS 2019-09-07 13:29:30 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS.fork0.chnk0.main 2019-09-07 13:29:34 [runtime] (chunks_complete) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS 2019-09-07 13:29:34 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS.fork0.join 2019-09-07 13:29:37 [runtime] (join_complete) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.MERGE_CLUSTERS 2019-09-07 13:29:38 [runtime] (ready) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.COMBINE_CLUSTERING 2019-09-07 13:29:39 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.COMBINE_CLUSTERING.fork0.chnk0.main 2019-09-07 13:29:42 [runtime] (chunks_complete) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.COMBINE_CLUSTERING 2019-09-07 13:29:44 [runtime] (ready) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION 2019-09-07 13:29:44 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.split 2019-09-07 13:29:47 [runtime] (split_complete) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION 2019-09-07 13:29:49 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.chnk0.main 2019-09-07 13:29:52 [runtime] (chunks_complete) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION 2019-09-07 13:29:53 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION.fork0.join 2019-09-07 13:29:56 [runtime] (join_complete) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.RUN_DIFFERENTIAL_EXPRESSION 2019-09-07 13:29:57 [runtime] (ready) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS 2019-09-07 13:29:58 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS.fork0.split 2019-09-07 13:30:01 [runtime] (split_complete) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS 2019-09-07 13:30:01 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS.fork0.chnk0.main 2019-09-07 13:30:05 [runtime] (chunks_complete) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS 2019-09-07 13:30:05 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS.fork0.join 2019-09-07 13:30:08 [runtime] (join_complete) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SC_RNA_ANALYZER.SUMMARIZE_ANALYSIS 2019-09-07 13:31:24 [runtime] (join_complete) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.REPORT_MOLECULES 2019-09-07 13:31:27 [runtime] (ready) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS 2019-09-07 13:31:27 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS.fork0.split 2019-09-07 13:31:32 [runtime] (split_complete) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS 2019-09-07 13:31:32 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS.fork0.chnk0.main 2019-09-07 13:33:14 [runtime] (chunks_complete) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS 2019-09-07 13:33:14 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS.fork0.join 2019-09-07 13:33:19 [runtime] (join_complete) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUBSAMPLE_READS 2019-09-07 13:33:20 [runtime] (ready) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS 2019-09-07 13:33:20 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS.fork0.split 2019-09-07 13:33:23 [runtime] (split_complete) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS 2019-09-07 13:33:23 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS.fork0.chnk0.main 2019-09-07 13:33:26 [runtime] (chunks_complete) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS 2019-09-07 13:33:27 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS.fork0.join 2019-09-07 13:33:30 [runtime] (join_complete) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SUMMARIZE_BASIC_REPORTS 2019-09-07 13:33:36 [runtime] (ready) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.CALL_PROTOSPACERS 2019-09-07 13:33:36 [runtime] (disabled) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.CALL_PROTOSPACERS 2019-09-07 13:33:37 [runtime] (ready) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS 2019-09-07 13:33:38 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS.fork0.chnk0.main 2019-09-07 13:33:38 [runtime] (ready) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET 2019-09-07 13:33:38 [runtime] (disabled) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_TARGET 2019-09-07 13:33:38 [runtime] (ready) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE 2019-09-07 13:33:38 [runtime] (disabled) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER._PERTURBATIONS_BY_FEATURE 2019-09-07 13:33:39 [runtime] (ready) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS 2019-09-07 13:33:39 [runtime] (disabled) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER.SUMMARIZE_CRISPR_ANALYSIS 2019-09-07 13:33:40 [runtime] (disabled) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._CRISPR_ANALYZER 2019-09-07 13:33:46 [runtime] (update) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 join_running 2019-09-07 13:33:54 [runtime] (chunks_complete) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER.SUMMARIZE_REPORTS 2019-09-07 13:33:57 [runtime] (ready) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS 2019-09-07 13:33:57 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS.fork0.split 2019-09-07 13:34:01 [runtime] (split_complete) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS 2019-09-07 13:34:01 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS.fork0.chnk0.main 2019-09-07 13:34:05 [runtime] (chunks_complete) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS 2019-09-07 13:34:06 [runtime] (run:local) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS.fork0.join 2019-09-07 13:34:09 [runtime] (join_complete) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.CLOUPE_PREPROCESS 2019-09-07 13:39:45 [runtime] (update) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS.fork0 join_running 2019-09-07 13:42:43 [runtime] (join_complete) ID.10X_G171C_mm9_1500.SC_RNA_COUNTER_CS.SC_RNA_COUNTER._BASIC_SC_RNA_COUNTER.SORT_BY_POS Outputs: - Run summary HTML: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_1500/outs/web_summary.html - Run summary CSV: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_1500/outs/metrics_summary.csv - BAM: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_1500/outs/possorted_genome_bam.bam - BAM index: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_1500/outs/possorted_genome_bam.bam.bai - Filtered feature-barcode matrices MEX: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_1500/outs/filtered_feature_bc_matrix - Filtered feature-barcode matrices HDF5: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_1500/outs/filtered_feature_bc_matrix.h5 - Unfiltered feature-barcode matrices MEX: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_1500/outs/raw_feature_bc_matrix - Unfiltered feature-barcode matrices HDF5: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_1500/outs/raw_feature_bc_matrix.h5 - Secondary analysis output CSV: null - Per-molecule read information: /net/waxman-server/mnt/data/waxmanlabvm_home/kkarri/G171/10X_G171C_mm9_1500/outs/molecule_info.h5 - CRISPR-specific analysis: null - Loupe Cell Browser file: null - Feature Reference: null Waiting 6 seconds for UI to do final refresh. Pipestance completed successfully! 2019-09-07 13:43:03 Shutting down. Saving pipestance info to "10X_G171C_mm9_1500/10X_G171C_mm9_1500.mri.tgz" Finished .............. Sat Sep 7 13:43:53 EDT 2019